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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OMFV] human gut metagenome; feces
HIT:
127 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183487239
OMFV01006012
[OMFV] human gut metagenome; feces
1
77
+
Ile
GAT
[ENA]
¢þ
>WENV183487155
OMFV01000149
[OMFV] human gut metagenome; feces
55
130
+
Pro
TGG
[ENA]
¢þ
>WENV183487259
OMFV01009419
[OMFV] human gut metagenome; feces
57
147
+
Ser
GCT
[ENA]
¢þ
>WENV183487193
OMFV01001274
[OMFV] human gut metagenome; feces
71
142
+
Gln
TTG
[ENA]
¢þ
>WENV183487192
OMFV01001219
[OMFV] human gut metagenome; feces
76
150
+
Trp
CCA
[ENA]
¢þ
>WENV183487200
OMFV01001889
[OMFV] human gut metagenome; feces
78
153
+
Pro
CGG
[ENA]
¢þ
>WENV183487245
OMFV01007553
[OMFV] human gut metagenome; feces
83
158
+
Arg
TCT
[ENA]
¢þ
>WENV183487204
OMFV01001993
[OMFV] human gut metagenome; feces
91
165
+
Cys
GCA
[ENA]
¢þ
>WENV183487261
OMFV01010288
[OMFV] human gut metagenome; feces
92
177
+
Ser
TGA
[ENA]
¢þ
>WENV183487254
OMFV01008525
[OMFV] human gut metagenome; feces
103
178
+
Ala
TGC
[ENA]
¢þ
>WENV183487242
OMFV01006169
[OMFV] human gut metagenome; feces
104
16
-
Ser
TGA
[ENA]
¢þ
>WENV183487186
OMFV01000836
[OMFV] human gut metagenome; feces
107
31
-
Val
CAC
[ENA]
¢þ
>WENV183487208
OMFV01002504
[OMFV] human gut metagenome; feces
114
188
+
Glu
CTC
[ENA]
¢þ
>WENV183487232
OMFV01004636
[OMFV] human gut metagenome; feces
125
49
-
Asp
GTC
[ENA]
¢þ
>WENV183487266
OMFV01010709
[OMFV] human gut metagenome; feces
131
45
-
Leu
CAA
[ENA]
¢þ
>WENV183487156
OMFV01000149
[OMFV] human gut metagenome; feces
136
210
+
Gly
TCC
[ENA]
¢þ
>WENV183487263
OMFV01010437
[OMFV] human gut metagenome; feces
137
62
-
Lys
TTT
[ENA]
¢þ
>WENV183487243
OMFV01006363
[OMFV] human gut metagenome; feces
148
74
-
Gly
TCC
[ENA]
¢þ
>WENV183487175
OMFV01000640
[OMFV] human gut metagenome; feces
160
234
+
Ile
GAT
[ENA]
¢þ
>WENV183487227
OMFV01004058
[OMFV] human gut metagenome; feces
178
104
-
Thr
TGT
[ENA]
¢þ
>WENV183487185
OMFV01000836
[OMFV] human gut metagenome; feces
185
111
-
Glu
TTC
[ENA]
¢þ
>WENV183487255
OMFV01008525
[OMFV] human gut metagenome; feces
187
263
+
Ile
GAT
[ENA]
¢þ
>WENV183487257
OMFV01008776
[OMFV] human gut metagenome; feces
188
117
-
Gly
CCC
[ENA]
¢þ
>WENV183487258
OMFV01008860
[OMFV] human gut metagenome; feces
198
282
+
Leu
TAA
[ENA]
¢þ
>WENV183487246
OMFV01007553
[OMFV] human gut metagenome; feces
201
275
+
His
GTG
[ENA]
¢þ
>WENV183487234
OMFV01004895
[OMFV] human gut metagenome; feces
204
288
+
Leu
GAG
[ENA]
¢þ
>WENV183487231
OMFV01004636
[OMFV] human gut metagenome; feces
206
129
-
Val
TAC
[ENA]
¢þ
>WENV183487238
OMFV01005168
[OMFV] human gut metagenome; feces
210
137
-
Glu
CTC
[ENA]
¢þ
>WENV183487260
OMFV01010014
[OMFV] human gut metagenome; feces
213
139
-
Pro
TGG
[ENA]
¢þ
>WENV183487203
OMFV01001922
[OMFV] human gut metagenome; feces
219
147
-
Glu
CTC
[ENA]
¢þ
>WENV183487194
OMFV01001315
[OMFV] human gut metagenome; feces
222
295
+
Pro
CGG
[ENA]
¢þ
>WENV183487226
OMFV01003705
[OMFV] human gut metagenome; feces
230
139
-
Ser
GCT
[ENA]
¢þ
>WENV183487220
OMFV01003324
[OMFV] human gut metagenome; feces
246
326
+
Leu
TAG
[ENA]
¢þ
>WENV183487176
OMFV01000640
[OMFV] human gut metagenome; feces
251
325
+
Ala
TGC
[ENA]
¢þ
>WENV183487267
OMFV01011166
[OMFV] human gut metagenome; feces
279
207
-
Glu
TTC
[ENA]
¢þ
>WENV183487173
OMFV01000611
[OMFV] human gut metagenome; feces
280
208
-
Thr
GGT
[ENA]
¢þ
>WENV183487247
OMFV01007553
[OMFV] human gut metagenome; feces
287
360
+
Gln
TTG
[ENA]
¢þ
>WENV183487184
OMFV01000836
[OMFV] human gut metagenome; feces
298
222
-
Met
CAT
[ENA]
¢þ
>WENV183487251
OMFV01007799
[OMFV] human gut metagenome; feces
313
387
+
Gly
TCC
[ENA]
¢þ
>WENV183487262
OMFV01010437
[OMFV] human gut metagenome; feces
316
232
-
Leu
CAA
[ENA]
¢þ
>WENV183487197
OMFV01001734
[OMFV] human gut metagenome; feces
320
239
-
Leu
TAG
[ENA]
¢þ
>WENV183487253
OMFV01008040
[OMFV] human gut metagenome; feces
326
398
+
Gly
GCC
[ENA]
¢þ
>WENV183487225
OMFV01003705
[OMFV] human gut metagenome; feces
332
245
-
Ser
TGA
[ENA]
¢þ
>WENV183487181
OMFV01000829
[OMFV] human gut metagenome; feces
337
413
+
Asp
GTC
[ENA]
¢þ
>WENV183487180
OMFV01000779
[OMFV] human gut metagenome; feces
343
418
+
Thr
GGT
[ENA]
¢þ
>WENV183487264
OMFV01010600
[OMFV] human gut metagenome; feces
357
430
+
Phe
GAA
[ENA]
¢þ
>WENV183487209
OMFV01002504
[OMFV] human gut metagenome; feces
357
431
+
Asn
GTT
[ENA]
¢þ
>WENV183487222
OMFV01003427
[OMFV] human gut metagenome; feces
359
435
+
Asn
GTT
[ENA]
¢þ
>WENV183487172
OMFV01000611
[OMFV] human gut metagenome; feces
365
290
-
Gly
TCC
[ENA]
¢þ
>WENV183487248
OMFV01007553
[OMFV] human gut metagenome; feces
384
457
+
Lys
TTT
[ENA]
¢þ
>WENV183487265
OMFV01010708
[OMFV] human gut metagenome; feces
395
471
+
Arg
ACG
[ENA]
¢þ
>WENV183487252
OMFV01007799
[OMFV] human gut metagenome; feces
400
476
+
Arg
TCT
[ENA]
¢þ
>WENV183487224
OMFV01003609
[OMFV] human gut metagenome; feces
410
485
+
Val
GAC
[ENA]
¢þ
>WENV183487182
OMFV01000829
[OMFV] human gut metagenome; feces
417
492
+
Phe
GAA
[ENA]
¢þ
>WENV183487166
OMFV01000600
[OMFV] human gut metagenome; feces
418
493
+
Asp
GTC
[ENA]
¢þ
>WENV183487268
OMFV01011313
[OMFV] human gut metagenome; feces
421
346
-
Trp
CCA
[ENA]
¢þ
>WENV183487187
OMFV01000864
[OMFV] human gut metagenome; feces
430
357
-
Ala
GGC
[ENA]
¢þ
>WENV183487215
OMFV01002849
[OMFV] human gut metagenome; feces
439
364
-
Thr
CGT
[ENA]
¢þ
>WENV183487230
OMFV01004425
[OMFV] human gut metagenome; feces
439
366
-
Gly
CCC
[ENA]
¢þ
>WENV183487240
OMFV01006126
[OMFV] human gut metagenome; feces
444
518
+
Ile2
CAT
[ENA]
¢þ
>WENV183487171
OMFV01000611
[OMFV] human gut metagenome; feces
453
373
-
Tyr
GTA
[ENA]
¢þ
>WENV183487229
OMFV01004347
[OMFV] human gut metagenome; feces
464
391
-
Ala
CGC
[ENA]
¢þ
>WENV183487219
OMFV01003043
[OMFV] human gut metagenome; feces
475
549
+
Ile2
CAT
[ENA]
¢þ
>WENV183487214
OMFV01002805
[OMFV] human gut metagenome; feces
491
416
-
Asn
GTT
[ENA]
¢þ
>WENV183487244
OMFV01006446
[OMFV] human gut metagenome; feces
493
418
-
Ala
TGC
[ENA]
¢þ
>WENV183487250
OMFV01007613
[OMFV] human gut metagenome; feces
497
423
-
Met
CAT
[ENA]
¢þ
>WENV183487210
OMFV01002504
[OMFV] human gut metagenome; feces
497
573
+
Ile2
CAT
[ENA]
¢þ
>WENV183487236
OMFV01005141
[OMFV] human gut metagenome; feces
504
579
+
Thr
CGT
[ENA]
¢þ
>WENV183487167
OMFV01000600
[OMFV] human gut metagenome; feces
509
583
+
Val
TAC
[ENA]
¢þ
>WENV183487191
OMFV01001078
[OMFV] human gut metagenome; feces
516
589
+
Lys
TTT
[ENA]
¢þ
>WENV183487183
OMFV01000829
[OMFV] human gut metagenome; feces
518
593
+
Gly
GCC
[ENA]
¢þ
>WENV183487235
OMFV01004919
[OMFV] human gut metagenome; feces
552
636
+
Leu
GAG
[ENA]
¢þ
>WENV183487170
OMFV01000611
[OMFV] human gut metagenome; feces
559
485
-
Thr
TGT
[ENA]
¢þ
>WENV183487256
OMFV01008571
[OMFV] human gut metagenome; feces
564
488
-
Arg
CCG
[ENA]
¢þ
>WENV183487237
OMFV01005141
[OMFV] human gut metagenome; feces
583
658
+
Thr
TGT
[ENA]
¢þ
>WENV183487198
OMFV01001791
[OMFV] human gut metagenome; feces
588
513
-
fMet
CAT
[ENA]
¢þ
>WENV183487211
OMFV01002504
[OMFV] human gut metagenome; feces
588
663
+
Trp
CCA
[ENA]
¢þ
>WENV183487241
OMFV01006136
[OMFV] human gut metagenome; feces
596
523
-
Ala
TGC
[ENA]
¢þ
>WENV183487168
OMFV01000600
[OMFV] human gut metagenome; feces
602
689
+
Leu
TAA
[ENA]
¢þ
>WENV183487233
OMFV01004687
[OMFV] human gut metagenome; feces
613
684
+
Cys
GCA
[ENA]
¢þ
>WENV183487249
OMFV01007613
[OMFV] human gut metagenome; feces
617
546
-
Gln
CTG
[ENA]
¢þ
>WENV183487199
OMFV01001861
[OMFV] human gut metagenome; feces
639
712
+
Gly
CCC
[ENA]
¢þ
>WENV183487223
OMFV01003480
[OMFV] human gut metagenome; feces
659
734
+
Thr
CGT
[ENA]
¢þ
>WENV183487216
OMFV01002859
[OMFV] human gut metagenome; feces
671
596
-
Pro
TGG
[ENA]
¢þ
>WENV183487152
OMFV01000086
[OMFV] human gut metagenome; feces
673
599
-
Asp
GTC
[ENA]
¢þ
>WENV183487205
OMFV01001998
[OMFV] human gut metagenome; feces
728
804
+
Arg
CCT
[ENA]
¢þ
>WENV183487196
OMFV01001698
[OMFV] human gut metagenome; feces
759
847
+
Ser
GGA
[ENA]
¢þ
>WENV183487228
OMFV01004226
[OMFV] human gut metagenome; feces
763
836
+
Gly
GCC
[ENA]
¢þ
>WENV183487169
OMFV01000600
[OMFV] human gut metagenome; feces
766
841
+
Arg
ACG
[ENA]
¢þ
>WENV183487179
OMFV01000725
[OMFV] human gut metagenome; feces
772
688
-
Leu
CAG
[ENA]
¢þ
>WENV183487221
OMFV01003335
[OMFV] human gut metagenome; feces
800
727
-
Ala
TGC
[ENA]
¢þ
>WENV183487202
OMFV01001898
[OMFV] human gut metagenome; feces
903
814
-
Ser
GCT
[ENA]
¢þ
>WENV183487178
OMFV01000725
[OMFV] human gut metagenome; feces
910
995
+
Leu
AAG
[ENA]
¢þ
>WENV183487217
OMFV01002897
[OMFV] human gut metagenome; feces
943
858
-
Ser
CGA
[ENA]
¢þ
>WENV183487162
OMFV01000493
[OMFV] human gut metagenome; feces
1034
1105
+
Trp
CCA
[ENA]
¢þ
>WENV183487212
OMFV01002518
[OMFV] human gut metagenome; feces
1036
1108
+
Thr
CGT
[ENA]
¢þ
>WENV183487177
OMFV01000657
[OMFV] human gut metagenome; feces
1049
1136
+
Ser
GCT
[ENA]
¢þ
>WENV183487213
OMFV01002730
[OMFV] human gut metagenome; feces
1058
1130
+
Arg
CCT
[ENA]
¢þ
>WENV183487160
OMFV01000427
[OMFV] human gut metagenome; feces
1058
1132
+
Pro
TGG
[ENA]
¢þ
>WENV183487218
OMFV01002922
[OMFV] human gut metagenome; feces
1069
1145
+
Arg
CCG
[ENA]
¢þ
>WENV183487207
OMFV01002374
[OMFV] human gut metagenome; feces
1124
1200
+
Arg
CCG
[ENA]
¢þ
>WENV183487206
OMFV01002053
[OMFV] human gut metagenome; feces
1175
1101
-
fMet
CAT
[ENA]
¢þ
>WENV183487190
OMFV01001008
[OMFV] human gut metagenome; feces
1203
1132
-
Gly
GCC
[ENA]
¢þ
>WENV183487189
OMFV01000975
[OMFV] human gut metagenome; feces
1209
1136
-
Phe
GAA
[ENA]
¢þ
>WENV183487158
OMFV01000209
[OMFV] human gut metagenome; feces
1301
1229
-
Arg
CCG
[ENA]
¢þ
>WENV183487201
OMFV01001891
[OMFV] human gut metagenome; feces
1406
1330
-
Val
CAC
[ENA]
¢þ
>WENV183487157
OMFV01000183
[OMFV] human gut metagenome; feces
1500
1413
-
Leu
CAG
[ENA]
¢þ
>WENV183487195
OMFV01001652
[OMFV] human gut metagenome; feces
1521
1430
-
Ser
GGA
[ENA]
¢þ
>WENV183487188
OMFV01000877
[OMFV] human gut metagenome; feces
1577
1505
-
Gln
CTG
[ENA]
¢þ
>WENV183487161
OMFV01000480
[OMFV] human gut metagenome; feces
1628
1710
+
Leu
CAA
[ENA]
¢þ
>WENV183487174
OMFV01000634
[OMFV] human gut metagenome; feces
1658
1573
-
Leu
TAA
[ENA]
¢þ
>WENV183487164
OMFV01000518
[OMFV] human gut metagenome; feces
1804
1878
+
Arg
CCG
[ENA]
¢þ
>WENV183487163
OMFV01000501
[OMFV] human gut metagenome; feces
2156
2243
+
Ser
TGA
[ENA]
¢þ
>WENV183487145
OMFV01000051
[OMFV] human gut metagenome; feces
2271
2344
+
Asn
GTT
[ENA]
¢þ
>WENV183487165
OMFV01000541
[OMFV] human gut metagenome; feces
2319
2405
+
Ser
TGA
[ENA]
¢þ
>WENV183487146
OMFV01000051
[OMFV] human gut metagenome; feces
2348
2421
+
Glu
TTC
[ENA]
¢þ
>WENV183487151
OMFV01000079
[OMFV] human gut metagenome; feces
2349
2276
-
Arg
CCT
[ENA]
¢þ
>WENV183487147
OMFV01000051
[OMFV] human gut metagenome; feces
2493
2566
+
Thr
TGT
[ENA]
¢þ
>WENV183487148
OMFV01000051
[OMFV] human gut metagenome; feces
2569
2652
+
Tyr
GTA
[ENA]
¢þ
>WENV183487149
OMFV01000051
[OMFV] human gut metagenome; feces
2686
2759
+
fMet
CAT
[ENA]
¢þ
>WENV183487150
OMFV01000051
[OMFV] human gut metagenome; feces
2780
2853
+
Phe
GAA
[ENA]
¢þ
>WENV183487159
OMFV01000232
[OMFV] human gut metagenome; feces
2849
2924
+
Ala
CGC
[ENA]
¢þ
>WENV183487154
OMFV01000111
[OMFV] human gut metagenome; feces
3077
3005
-
Thr
GGT
[ENA]
¢þ
>WENV183487153
OMFV01000091
[OMFV] human gut metagenome; feces
3320
3394
+
Lys
CTT
[ENA]
¢þ
>WENV183487142
OMFV01000006
[OMFV] human gut metagenome; feces
3330
3401
+
Cys
GCA
[ENA]
¢þ
>WENV183487144
OMFV01000043
[OMFV] human gut metagenome; feces
3374
3304
-
Gly
TCC
[ENA]
¢þ
>WENV183487143
OMFV01000043
[OMFV] human gut metagenome; feces
3453
3378
-
Pro
TGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK