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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OMFX] human gut metagenome; feces
HIT:
101 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183487493
OMFX01003775
[OMFX] human gut metagenome; feces
5
81
+
Arg
TCT
[ENA]
¢þ
>WENV183487521
OMFX01008273
[OMFX] human gut metagenome; feces
11
86
+
Gln
TTG
[ENA]
¢þ
>WENV183487495
OMFX01003909
[OMFX] human gut metagenome; feces
21
97
+
Asp
GTC
[ENA]
¢þ
>WENV183487509
OMFX01005864
[OMFX] human gut metagenome; feces
29
106
+
Ile
GAT
[ENA]
¢þ
>WENV183487514
OMFX01006454
[OMFX] human gut metagenome; feces
38
112
+
Leu
CAA
[ENA]
¢þ
>WENV183487470
OMFX01001455
[OMFX] human gut metagenome; feces
44
127
+
Tyr
GTA
[ENA]
¢þ
>WENV183487456
OMFX01000656
[OMFX] human gut metagenome; feces
52
136
+
Leu
GAG
[ENA]
¢þ
>WENV183487492
OMFX01003688
[OMFX] human gut metagenome; feces
66
140
+
Arg
TCT
[ENA]
¢þ
>WENV183487512
OMFX01006114
[OMFX] human gut metagenome; feces
72
1
-
Asn
GTT
[ENA]
¢þ
>WENV183487435
OMFX01000224
[OMFX] human gut metagenome; feces
79
154
+
Thr
CGT
[ENA]
¢þ
>WENV183487464
OMFX01001129
[OMFX] human gut metagenome; feces
87
13
-
Ile2
CAT
[ENA]
¢þ
>WENV183487522
OMFX01008273
[OMFX] human gut metagenome; feces
90
165
+
Lys
TTT
[ENA]
¢þ
>WENV183487457
OMFX01000667
[OMFX] human gut metagenome; feces
91
17
-
His
GTG
[ENA]
¢þ
>WENV183487496
OMFX01003909
[OMFX] human gut metagenome; feces
102
177
+
Phe
GAA
[ENA]
¢þ
>WENV183487515
OMFX01006684
[OMFX] human gut metagenome; feces
103
28
-
Thr
CGT
[ENA]
¢þ
>WENV183487459
OMFX01000728
[OMFX] human gut metagenome; feces
112
197
+
Ser
TGA
[ENA]
¢þ
>WENV183487507
OMFX01005367
[OMFX] human gut metagenome; feces
114
196
+
Leu
TAG
[ENA]
¢þ
>WENV183487517
OMFX01007631
[OMFX] human gut metagenome; feces
134
207
+
Asn
GTT
[ENA]
¢þ
>WENV183487466
OMFX01001334
[OMFX] human gut metagenome; feces
140
51
-
Ser
GCT
[ENA]
¢þ
>WENV183487501
OMFX01004124
[OMFX] human gut metagenome; feces
143
68
-
Lys
TTT
[ENA]
¢þ
>WENV183487471
OMFX01001455
[OMFX] human gut metagenome; feces
144
216
+
Thr
TGT
[ENA]
¢þ
>WENV183487482
OMFX01002794
[OMFX] human gut metagenome; feces
147
233
+
Ser
CGA
[ENA]
¢þ
>WENV183487484
OMFX01003006
[OMFX] human gut metagenome; feces
155
83
-
Arg
CCT
[ENA]
¢þ
>WENV183487503
OMFX01004388
[OMFX] human gut metagenome; feces
157
228
+
Gln
TTG
[ENA]
¢þ
>WENV183487526
OMFX01009277
[OMFX] human gut metagenome; feces
159
251
+
Ser
GCT
[ENA]
¢þ
>WENV183487518
OMFX01008005
[OMFX] human gut metagenome; feces
166
93
-
Gly
CCC
[ENA]
¢þ
>WENV183487523
OMFX01008273
[OMFX] human gut metagenome; feces
181
256
+
Glu
TTC
[ENA]
¢þ
>WENV183487516
OMFX01006904
[OMFX] human gut metagenome; feces
182
268
+
Leu
CAG
[ENA]
¢þ
>WENV183487497
OMFX01003909
[OMFX] human gut metagenome; feces
183
258
+
Gly
GCC
[ENA]
¢þ
>WENV183487506
OMFX01004946
[OMFX] human gut metagenome; feces
191
116
-
Arg
CCT
[ENA]
¢þ
>WENV183487483
OMFX01002868
[OMFX] human gut metagenome; feces
191
118
-
Arg
CCT
[ENA]
¢þ
>WENV183487472
OMFX01001455
[OMFX] human gut metagenome; feces
226
302
+
Ile2
CAT
[ENA]
¢þ
>WENV183487436
OMFX01000224
[OMFX] human gut metagenome; feces
248
329
+
Leu
TAG
[ENA]
¢þ
>WENV183487527
OMFX01009277
[OMFX] human gut metagenome; feces
258
333
+
Trp
CCA
[ENA]
¢þ
>WENV183487524
OMFX01008273
[OMFX] human gut metagenome; feces
263
338
+
Val
TAC
[ENA]
¢þ
>WENV183487474
OMFX01001461
[OMFX] human gut metagenome; feces
264
180
-
Leu
TAG
[ENA]
¢þ
>WENV183487440
OMFX01000239
[OMFX] human gut metagenome; feces
270
196
-
Glu
TTC
[ENA]
¢þ
>WENV183487461
OMFX01000814
[OMFX] human gut metagenome; feces
291
216
-
Ala
CGC
[ENA]
¢þ
>WENV183487520
OMFX01008069
[OMFX] human gut metagenome; feces
311
237
-
Ala
TGC
[ENA]
¢þ
>WENV183487473
OMFX01001455
[OMFX] human gut metagenome; feces
315
390
+
Trp
CCA
[ENA]
¢þ
>WENV183487498
OMFX01003909
[OMFX] human gut metagenome; feces
319
393
+
Cys
GCA
[ENA]
¢þ
>WENV183487481
OMFX01001964
[OMFX] human gut metagenome; feces
334
421
+
Ser
CGA
[ENA]
¢þ
>WENV183487434
OMFX01000137
[OMFX] human gut metagenome; feces
346
419
+
Trp
CCA
[ENA]
¢þ
>WENV183487439
OMFX01000239
[OMFX] human gut metagenome; feces
351
275
-
Met
CAT
[ENA]
¢þ
>WENV183487525
OMFX01008507
[OMFX] human gut metagenome; feces
374
449
+
Val
TAC
[ENA]
¢þ
>WENV183487510
OMFX01005941
[OMFX] human gut metagenome; feces
382
457
+
Thr
TGT
[ENA]
¢þ
>WENV183487475
OMFX01001604
[OMFX] human gut metagenome; feces
388
313
-
Asn
GTT
[ENA]
¢þ
>WENV183487519
OMFX01008069
[OMFX] human gut metagenome; feces
411
335
-
Ile
GAT
[ENA]
¢þ
>WENV183487508
OMFX01005454
[OMFX] human gut metagenome; feces
419
495
+
Arg
CCT
[ENA]
¢þ
>WENV183487504
OMFX01004733
[OMFX] human gut metagenome; feces
419
508
+
Leu
GAG
[ENA]
¢þ
>WENV183487480
OMFX01001911
[OMFX] human gut metagenome; feces
428
501
+
Val
CAC
[ENA]
¢þ
>WENV183487449
OMFX01000404
[OMFX] human gut metagenome; feces
437
362
-
Ala
GGC
[ENA]
¢þ
>WENV183487485
OMFX01003081
[OMFX] human gut metagenome; feces
448
519
+
Gln
CTG
[ENA]
¢þ
>WENV183487505
OMFX01004780
[OMFX] human gut metagenome; feces
465
391
-
Thr
TGT
[ENA]
¢þ
>WENV183487502
OMFX01004341
[OMFX] human gut metagenome; feces
469
393
-
Pro
CGG
[ENA]
¢þ
>WENV183487511
OMFX01005941
[OMFX] human gut metagenome; feces
481
565
+
Tyr
GTA
[ENA]
¢þ
>WENV183487469
OMFX01001344
[OMFX] human gut metagenome; feces
500
426
-
Lys
TTT
[ENA]
¢þ
>WENV183487513
OMFX01006282
[OMFX] human gut metagenome; feces
501
581
+
Leu
TAG
[ENA]
¢þ
>WENV183487431
OMFX01000093
[OMFX] human gut metagenome; feces
528
602
+
Ile
GAT
[ENA]
¢þ
>WENV183487486
OMFX01003158
[OMFX] human gut metagenome; feces
530
618
+
Ser
TGA
[ENA]
¢þ
>WENV183487499
OMFX01003989
[OMFX] human gut metagenome; feces
553
464
-
Ser
CGA
[ENA]
¢þ
>WENV183487462
OMFX01000933
[OMFX] human gut metagenome; feces
602
677
+
Ala
TGC
[ENA]
¢þ
>WENV183487500
OMFX01004124
[OMFX] human gut metagenome; feces
605
679
+
Lys
CTT
[ENA]
¢þ
>WENV183487453
OMFX01000563
[OMFX] human gut metagenome; feces
641
716
+
Lys
CTT
[ENA]
¢þ
>WENV183487432
OMFX01000093
[OMFX] human gut metagenome; feces
644
717
+
Ala
TGC
[ENA]
¢þ
>WENV183487491
OMFX01003666
[OMFX] human gut metagenome; feces
648
572
-
Ile
GAT
[ENA]
¢þ
>WENV183487489
OMFX01003640
[OMFX] human gut metagenome; feces
663
587
-
Ala
TGC
[ENA]
¢þ
>WENV183487487
OMFX01003158
[OMFX] human gut metagenome; feces
687
777
+
Ser
GCT
[ENA]
¢þ
>WENV183487494
OMFX01003786
[OMFX] human gut metagenome; feces
690
607
-
Leu
CAG
[ENA]
¢þ
>WENV183487468
OMFX01001344
[OMFX] human gut metagenome; feces
690
614
-
Asp
GTC
[ENA]
¢þ
>WENV183487463
OMFX01000933
[OMFX] human gut metagenome; feces
691
767
+
Ile
GAT
[ENA]
¢þ
>WENV183487488
OMFX01003517
[OMFX] human gut metagenome; feces
693
619
-
Gly
TCC
[ENA]
¢þ
>WENV183487433
OMFX01000093
[OMFX] human gut metagenome; feces
718
791
+
Ala
GGC
[ENA]
¢þ
>WENV183487460
OMFX01000785
[OMFX] human gut metagenome; feces
723
797
+
Met
CAT
[ENA]
¢þ
>WENV183487490
OMFX01003666
[OMFX] human gut metagenome; feces
727
652
-
Ala
TGC
[ENA]
¢þ
>WENV183487478
OMFX01001771
[OMFX] human gut metagenome; feces
736
662
-
Asp
GTC
[ENA]
¢þ
>WENV183487454
OMFX01000563
[OMFX] human gut metagenome; feces
767
841
+
Glu
CTC
[ENA]
¢þ
>WENV183487467
OMFX01001344
[OMFX] human gut metagenome; feces
771
696
-
Val
TAC
[ENA]
¢þ
>WENV183487476
OMFX01001610
[OMFX] human gut metagenome; feces
925
852
-
Gly
GCC
[ENA]
¢þ
>WENV183487477
OMFX01001662
[OMFX] human gut metagenome; feces
931
1017
+
Leu
CAG
[ENA]
¢þ
>WENV183487479
OMFX01001826
[OMFX] human gut metagenome; feces
942
869
-
Thr
CGT
[ENA]
¢þ
>WENV183487451
OMFX01000438
[OMFX] human gut metagenome; feces
1014
944
-
Gly
TCC
[ENA]
¢þ
>WENV183487447
OMFX01000393
[OMFX] human gut metagenome; feces
1036
964
-
Thr
GGT
[ENA]
¢þ
>WENV183487455
OMFX01000563
[OMFX] human gut metagenome; feces
1045
1120
+
Asn
GTT
[ENA]
¢þ
>WENV183487465
OMFX01001253
[OMFX] human gut metagenome; feces
1094
1009
-
Leu
CAG
[ENA]
¢þ
>WENV183487450
OMFX01000438
[OMFX] human gut metagenome; feces
1107
1033
-
Pro
TGG
[ENA]
¢þ
>WENV183487446
OMFX01000393
[OMFX] human gut metagenome; feces
1208
1125
-
Tyr
GTA
[ENA]
¢þ
>WENV183487427
OMFX01000008
[OMFX] human gut metagenome; feces
1211
1127
-
Leu
TAA
[ENA]
¢þ
>WENV183487437
OMFX01000225
[OMFX] human gut metagenome; feces
1315
1388
+
Phe
GAA
[ENA]
¢þ
>WENV183487452
OMFX01000471
[OMFX] human gut metagenome; feces
1330
1246
-
Leu
CAA
[ENA]
¢þ
>WENV183487458
OMFX01000722
[OMFX] human gut metagenome; feces
1350
1274
-
Ile
GAT
[ENA]
¢þ
>WENV183487445
OMFX01000393
[OMFX] human gut metagenome; feces
1352
1278
-
Thr
TGT
[ENA]
¢þ
>WENV183487438
OMFX01000225
[OMFX] human gut metagenome; feces
1405
1478
+
Pro
CGG
[ENA]
¢þ
>WENV183487441
OMFX01000274
[OMFX] human gut metagenome; feces
1499
1572
+
Lys
CTT
[ENA]
¢þ
>WENV183487448
OMFX01000403
[OMFX] human gut metagenome; feces
1511
1586
+
Pro
CGG
[ENA]
¢þ
>WENV183487443
OMFX01000330
[OMFX] human gut metagenome; feces
1628
1701
+
Lys
TTT
[ENA]
¢þ
>WENV183487442
OMFX01000301
[OMFX] human gut metagenome; feces
1681
1605
-
Arg
CCT
[ENA]
¢þ
>WENV183487444
OMFX01000363
[OMFX] human gut metagenome; feces
1738
1666
-
Glu
TTC
[ENA]
¢þ
>WENV183487429
OMFX01000072
[OMFX] human gut metagenome; feces
2994
3068
+
Ile
GAT
[ENA]
¢þ
>WENV183487430
OMFX01000072
[OMFX] human gut metagenome; feces
3169
3243
+
Ala
TGC
[ENA]
¢þ
>WENV183487428
OMFX01000016
[OMFX] human gut metagenome; feces
3254
3177
-
Sup
CTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK