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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OMGE] human gut metagenome; feces
HIT:
47 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183490935
OMGE01002248
[OMGE] human gut metagenome; feces
31
107
+
Asp
GTC
[ENA]
¢þ
>WENV183490951
OMGE01006532
[OMGE] human gut metagenome; feces
43
118
+
Lys
CTT
[ENA]
¢þ
>WENV183490922
OMGE01000608
[OMGE] human gut metagenome; feces
58
149
+
Ser
GGA
[ENA]
¢þ
>WENV183490960
OMGE01009242
[OMGE] human gut metagenome; feces
74
148
+
Val
TAC
[ENA]
¢þ
>WENV183490945
OMGE01002397
[OMGE] human gut metagenome; feces
85
12
-
Lys
TTT
[ENA]
¢þ
>WENV183490954
OMGE01007662
[OMGE] human gut metagenome; feces
96
182
+
Leu
CAA
[ENA]
¢þ
>WENV183490958
OMGE01008414
[OMGE] human gut metagenome; feces
107
32
-
Lys
TTT
[ENA]
¢þ
>WENV183490936
OMGE01002248
[OMGE] human gut metagenome; feces
115
190
+
Phe
GAA
[ENA]
¢þ
>WENV183490931
OMGE01002050
[OMGE] human gut metagenome; feces
125
41
-
Leu
TAA
[ENA]
¢þ
>WENV183490959
OMGE01008758
[OMGE] human gut metagenome; feces
135
61
-
Asn
GTT
[ENA]
¢þ
>WENV183490917
OMGE01000104
[OMGE] human gut metagenome; feces
146
64
-
Leu
CAG
[ENA]
¢þ
>WENV183490946
OMGE01002400
[OMGE] human gut metagenome; feces
154
225
+
Sup
CTA
[ENA]
¢þ
>WENV183490918
OMGE01000173
[OMGE] human gut metagenome; feces
161
86
-
Ala
TGC
[ENA]
¢þ
>WENV183490947
OMGE01003511
[OMGE] human gut metagenome; feces
173
88
-
Tyr
GTA
[ENA]
¢þ
>WENV183490925
OMGE01001310
[OMGE] human gut metagenome; feces
173
259
+
Leu
CAG
[ENA]
¢þ
>WENV183490961
OMGE01009242
[OMGE] human gut metagenome; feces
180
253
+
Thr
TGT
[ENA]
¢þ
>WENV183490957
OMGE01008414
[OMGE] human gut metagenome; feces
187
113
-
Gln
TTG
[ENA]
¢þ
>WENV183490937
OMGE01002248
[OMGE] human gut metagenome; feces
196
271
+
Gly
GCC
[ENA]
¢þ
>WENV183490944
OMGE01002397
[OMGE] human gut metagenome; feces
203
131
-
Gln
TTG
[ENA]
¢þ
>WENV183490929
OMGE01001968
[OMGE] human gut metagenome; feces
225
312
+
Ser
TGA
[ENA]
¢þ
>WENV183490962
OMGE01009242
[OMGE] human gut metagenome; feces
257
332
+
Ile2
CAT
[ENA]
¢þ
>WENV183490938
OMGE01002248
[OMGE] human gut metagenome; feces
280
355
+
Lys
CTT
[ENA]
¢þ
>WENV183490943
OMGE01002397
[OMGE] human gut metagenome; feces
289
215
-
His
GTG
[ENA]
¢þ
>WENV183490956
OMGE01008414
[OMGE] human gut metagenome; feces
292
216
-
His
GTG
[ENA]
¢þ
>WENV183490950
OMGE01005977
[OMGE] human gut metagenome; feces
296
221
-
Thr
CGT
[ENA]
¢þ
>WENV183490952
OMGE01007173
[OMGE] human gut metagenome; feces
329
257
-
Arg
CCT
[ENA]
¢þ
>WENV183490930
OMGE01001968
[OMGE] human gut metagenome; feces
345
438
+
Ser
GCT
[ENA]
¢þ
>WENV183490963
OMGE01009242
[OMGE] human gut metagenome; feces
361
435
+
Asp
GTC
[ENA]
¢þ
>WENV183490955
OMGE01008414
[OMGE] human gut metagenome; feces
375
299
-
Arg
TCT
[ENA]
¢þ
>WENV183490949
OMGE01005835
[OMGE] human gut metagenome; feces
378
303
-
Pro
CGG
[ENA]
¢þ
>WENV183490942
OMGE01002397
[OMGE] human gut metagenome; feces
401
326
-
Arg
TCT
[ENA]
¢þ
>WENV183490921
OMGE01000377
[OMGE] human gut metagenome; feces
418
344
-
Arg
CCT
[ENA]
¢þ
>WENV183490941
OMGE01002397
[OMGE] human gut metagenome; feces
475
405
-
Gly
TCC
[ENA]
¢þ
>WENV183490953
OMGE01007557
[OMGE] human gut metagenome; feces
523
447
-
Val
CAC
[ENA]
¢þ
>WENV183490927
OMGE01001433
[OMGE] human gut metagenome; feces
536
461
-
Lys
CTT
[ENA]
¢þ
>WENV183490919
OMGE01000197
[OMGE] human gut metagenome; feces
568
641
+
Ile2
CAT
[ENA]
¢þ
>WENV183490940
OMGE01002397
[OMGE] human gut metagenome; feces
578
505
-
Pro
TGG
[ENA]
¢þ
>WENV183490948
OMGE01004801
[OMGE] human gut metagenome; feces
593
519
-
Arg
CCG
[ENA]
¢þ
>WENV183490926
OMGE01001433
[OMGE] human gut metagenome; feces
614
540
-
Glu
CTC
[ENA]
¢þ
>WENV183490939
OMGE01002397
[OMGE] human gut metagenome; feces
681
608
-
Gln
CTG
[ENA]
¢þ
>WENV183490934
OMGE01002137
[OMGE] human gut metagenome; feces
712
637
-
Thr
GGT
[ENA]
¢þ
>WENV183490933
OMGE01002137
[OMGE] human gut metagenome; feces
794
718
-
Asp
GTC
[ENA]
¢þ
>WENV183490928
OMGE01001860
[OMGE] human gut metagenome; feces
864
791
-
Ala
TGC
[ENA]
¢þ
>WENV183490932
OMGE01002137
[OMGE] human gut metagenome; feces
893
818
-
Val
TAC
[ENA]
¢þ
>WENV183490924
OMGE01001044
[OMGE] human gut metagenome; feces
1079
1004
-
Gly
CCC
[ENA]
¢þ
>WENV183490923
OMGE01000832
[OMGE] human gut metagenome; feces
1232
1318
+
Leu
CAA
[ENA]
¢þ
>WENV183490920
OMGE01000200
[OMGE] human gut metagenome; feces
1338
1413
+
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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