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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OMHQ] human oral metagenome; human oral
HIT:
141 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183510780
OMHQ01012408
[OMHQ] human oral metagenome; human oral
1
77
+
Arg
GCG
[ENA]
¢þ
>WENV183510756
OMHQ01008352
[OMHQ] human oral metagenome; human oral
23
97
+
Glu
TTC
[ENA]
¢þ
>WENV183510766
OMHQ01009804
[OMHQ] human oral metagenome; human oral
31
120
+
Leu
GAG
[ENA]
¢þ
>WENV183510715
OMHQ01004554
[OMHQ] human oral metagenome; human oral
34
123
+
Ser
TGA
[ENA]
¢þ
>WENV183510750
OMHQ01008181
[OMHQ] human oral metagenome; human oral
63
139
+
Arg
TCT
[ENA]
¢þ
>WENV183510769
OMHQ01010438
[OMHQ] human oral metagenome; human oral
64
140
+
Arg
TCG
[ENA]
¢þ
>WENV183510765
OMHQ01009737
[OMHQ] human oral metagenome; human oral
100
191
+
Ser
GCT
[ENA]
¢þ
>WENV183510713
OMHQ01004242
[OMHQ] human oral metagenome; human oral
101
15
-
Leu
CAA
[ENA]
¢þ
>WENV183510757
OMHQ01008352
[OMHQ] human oral metagenome; human oral
103
179
+
Asp
GTC
[ENA]
¢þ
>WENV183510714
OMHQ01004360
[OMHQ] human oral metagenome; human oral
105
23
-
Tyr
GTA
[ENA]
¢þ
>WENV183510773
OMHQ01011079
[OMHQ] human oral metagenome; human oral
105
29
-
Met
CAT
[ENA]
¢þ
>WENV183510704
OMHQ01003865
[OMHQ] human oral metagenome; human oral
108
33
-
Arg
CCG
[ENA]
¢þ
>WENV183510727
OMHQ01005610
[OMHQ] human oral metagenome; human oral
108
184
+
Pro
TGG
[ENA]
¢þ
>WENV183510716
OMHQ01004554
[OMHQ] human oral metagenome; human oral
135
208
+
fMet
CAT
[ENA]
¢þ
>WENV183510701
OMHQ01003513
[OMHQ] human oral metagenome; human oral
141
214
+
Arg
TCT
[ENA]
¢þ
>WENV183510781
OMHQ01012408
[OMHQ] human oral metagenome; human oral
141
229
+
Ser
CGA
[ENA]
¢þ
>WENV183510751
OMHQ01008181
[OMHQ] human oral metagenome; human oral
148
225
+
Ile2
CAT
[ENA]
¢þ
>WENV183510744
OMHQ01007737
[OMHQ] human oral metagenome; human oral
152
226
+
Ile
GAT
[ENA]
¢þ
>WENV183510738
OMHQ01006947
[OMHQ] human oral metagenome; human oral
156
67
-
Leu
TAA
[ENA]
¢þ
>WENV183510692
OMHQ01003049
[OMHQ] human oral metagenome; human oral
179
104
-
Ile2
CAT
[ENA]
¢þ
>WENV183510777
OMHQ01011377
[OMHQ] human oral metagenome; human oral
187
101
-
Ser
TGA
[ENA]
¢þ
>WENV183510758
OMHQ01008352
[OMHQ] human oral metagenome; human oral
188
263
+
Phe
GAA
[ENA]
¢þ
>WENV183510775
OMHQ01011275
[OMHQ] human oral metagenome; human oral
191
265
+
Met
CAT
[ENA]
¢þ
>WENV183510770
OMHQ01010438
[OMHQ] human oral metagenome; human oral
191
267
+
Arg
CCG
[ENA]
¢þ
>WENV183510728
OMHQ01005610
[OMHQ] human oral metagenome; human oral
192
267
+
Gly
TCC
[ENA]
¢þ
>WENV183510772
OMHQ01011079
[OMHQ] human oral metagenome; human oral
195
120
-
Glu
TTC
[ENA]
¢þ
>WENV183510717
OMHQ01004554
[OMHQ] human oral metagenome; human oral
211
285
+
Phe
GAA
[ENA]
¢þ
>WENV183510684
OMHQ01002459
[OMHQ] human oral metagenome; human oral
219
143
-
Pro
GGG
[ENA]
¢þ
>WENV183510669
OMHQ01001668
[OMHQ] human oral metagenome; human oral
234
160
-
Asp
GTC
[ENA]
¢þ
>WENV183510767
OMHQ01009958
[OMHQ] human oral metagenome; human oral
240
166
-
Thr
TGT
[ENA]
¢þ
>WENV183510705
OMHQ01003868
[OMHQ] human oral metagenome; human oral
240
314
+
Thr
TGT
[ENA]
¢þ
>WENV183510752
OMHQ01008181
[OMHQ] human oral metagenome; human oral
241
315
+
Glu
TTC
[ENA]
¢þ
>WENV183510763
OMHQ01008512
[OMHQ] human oral metagenome; human oral
249
174
-
Ile2
CAT
[ENA]
¢þ
>WENV183510776
OMHQ01011345
[OMHQ] human oral metagenome; human oral
249
324
+
Thr
CGT
[ENA]
¢þ
>WENV183510682
OMHQ01002359
[OMHQ] human oral metagenome; human oral
258
332
+
Asp
GTC
[ENA]
¢þ
>WENV183510747
OMHQ01007858
[OMHQ] human oral metagenome; human oral
263
187
-
Lys
CTT
[ENA]
¢þ
>WENV183510673
OMHQ01001835
[OMHQ] human oral metagenome; human oral
277
349
+
Gln
CTG
[ENA]
¢þ
>WENV183510729
OMHQ01005610
[OMHQ] human oral metagenome; human oral
278
353
+
His
GTG
[ENA]
¢þ
>WENV183510774
OMHQ01011197
[OMHQ] human oral metagenome; human oral
279
363
+
Leu
TAG
[ENA]
¢þ
>WENV183510764
OMHQ01009321
[OMHQ] human oral metagenome; human oral
285
208
-
Arg
ACG
[ENA]
¢þ
>WENV183510650
OMHQ01000430
[OMHQ] human oral metagenome; human oral
286
212
-
Arg
CCG
[ENA]
¢þ
>WENV183510725
OMHQ01004816
[OMHQ] human oral metagenome; human oral
294
208
-
Leu
GAG
[ENA]
¢þ
>WENV183510768
OMHQ01010017
[OMHQ] human oral metagenome; human oral
294
220
-
Gly
TCC
[ENA]
¢þ
>WENV183510718
OMHQ01004554
[OMHQ] human oral metagenome; human oral
301
383
+
Tyr
GTA
[ENA]
¢þ
>WENV183510709
OMHQ01003956
[OMHQ] human oral metagenome; human oral
309
399
+
Ser
GGA
[ENA]
¢þ
>WENV183510753
OMHQ01008181
[OMHQ] human oral metagenome; human oral
320
395
+
Val
TAC
[ENA]
¢þ
>WENV183510759
OMHQ01008352
[OMHQ] human oral metagenome; human oral
321
396
+
Thr
TGT
[ENA]
¢þ
>WENV183510771
OMHQ01010504
[OMHQ] human oral metagenome; human oral
337
264
-
Gly
CCC
[ENA]
¢þ
>WENV183510733
OMHQ01005720
[OMHQ] human oral metagenome; human oral
338
411
+
Cys
GCA
[ENA]
¢þ
>WENV183510743
OMHQ01007552
[OMHQ] human oral metagenome; human oral
339
414
+
Ile
GAT
[ENA]
¢þ
>WENV183510706
OMHQ01003868
[OMHQ] human oral metagenome; human oral
341
423
+
Tyr
GTA
[ENA]
¢þ
>WENV183510685
OMHQ01002521
[OMHQ] human oral metagenome; human oral
349
425
+
fMet
CAT
[ENA]
¢þ
>WENV183510683
OMHQ01002359
[OMHQ] human oral metagenome; human oral
354
427
+
Phe
GAA
[ENA]
¢þ
>WENV183510723
OMHQ01004577
[OMHQ] human oral metagenome; human oral
355
284
-
Gly
CCC
[ENA]
¢þ
>WENV183510730
OMHQ01005610
[OMHQ] human oral metagenome; human oral
357
432
+
Lys
TTT
[ENA]
¢þ
>WENV183510712
OMHQ01004225
[OMHQ] human oral metagenome; human oral
357
433
+
fMet
CAT
[ENA]
¢þ
>WENV183510668
OMHQ01001668
[OMHQ] human oral metagenome; human oral
363
290
-
Glu
TTC
[ENA]
¢þ
>WENV183510739
OMHQ01007031
[OMHQ] human oral metagenome; human oral
364
438
+
Asn
GTT
[ENA]
¢þ
>WENV183510749
OMHQ01008067
[OMHQ] human oral metagenome; human oral
377
450
+
Pro
CGG
[ENA]
¢þ
>WENV183510746
OMHQ01007858
[OMHQ] human oral metagenome; human oral
380
304
-
Lys
CTT
[ENA]
¢þ
>WENV183510748
OMHQ01007863
[OMHQ] human oral metagenome; human oral
381
306
-
Gln
CTG
[ENA]
¢þ
>WENV183510719
OMHQ01004554
[OMHQ] human oral metagenome; human oral
393
465
+
Trp
CCA
[ENA]
¢þ
>WENV183510760
OMHQ01008352
[OMHQ] human oral metagenome; human oral
398
471
+
Gly
TCC
[ENA]
¢þ
>WENV183510736
OMHQ01006383
[OMHQ] human oral metagenome; human oral
400
472
+
Asn
GTT
[ENA]
¢þ
>WENV183510737
OMHQ01006719
[OMHQ] human oral metagenome; human oral
405
476
+
Cys
GCA
[ENA]
¢þ
>WENV183510754
OMHQ01008181
[OMHQ] human oral metagenome; human oral
406
482
+
Asp
GTC
[ENA]
¢þ
>WENV183510778
OMHQ01011752
[OMHQ] human oral metagenome; human oral
409
485
+
Lys
TTT
[ENA]
¢þ
>WENV183510664
OMHQ01001418
[OMHQ] human oral metagenome; human oral
412
338
-
Met
CAT
[ENA]
¢þ
>WENV183510674
OMHQ01001835
[OMHQ] human oral metagenome; human oral
422
495
+
Glu
CTC
[ENA]
¢þ
>WENV183510711
OMHQ01004067
[OMHQ] human oral metagenome; human oral
430
503
+
Lys
CTT
[ENA]
¢þ
>WENV183510703
OMHQ01003832
[OMHQ] human oral metagenome; human oral
434
507
+
Gln
CTG
[ENA]
¢þ
>WENV183510779
OMHQ01011887
[OMHQ] human oral metagenome; human oral
441
368
-
Pro
GGG
[ENA]
¢þ
>WENV183510740
OMHQ01007031
[OMHQ] human oral metagenome; human oral
443
530
+
Leu
TAA
[ENA]
¢þ
>WENV183510731
OMHQ01005610
[OMHQ] human oral metagenome; human oral
444
527
+
Leu
TAG
[ENA]
¢þ
>WENV183510707
OMHQ01003868
[OMHQ] human oral metagenome; human oral
467
540
+
Gly
TCC
[ENA]
¢þ
>WENV183510720
OMHQ01004554
[OMHQ] human oral metagenome; human oral
474
548
+
His
GTG
[ENA]
¢þ
>WENV183510761
OMHQ01008352
[OMHQ] human oral metagenome; human oral
483
571
+
Leu
TAA
[ENA]
¢þ
>WENV183510652
OMHQ01000684
[OMHQ] human oral metagenome; human oral
489
575
+
Ser
GGA
[ENA]
¢þ
>WENV183510755
OMHQ01008181
[OMHQ] human oral metagenome; human oral
500
575
+
Phe
GAA
[ENA]
¢þ
>WENV183510658
OMHQ01000824
[OMHQ] human oral metagenome; human oral
504
578
+
Ala
CGC
[ENA]
¢þ
>WENV183510657
OMHQ01000798
[OMHQ] human oral metagenome; human oral
508
432
-
Lys
CTT
[ENA]
¢þ
>WENV183510745
OMHQ01007777
[OMHQ] human oral metagenome; human oral
508
434
-
Ala
TGC
[ENA]
¢þ
>WENV183510690
OMHQ01002945
[OMHQ] human oral metagenome; human oral
514
587
+
fMet
CAT
[ENA]
¢þ
>WENV183510762
OMHQ01008512
[OMHQ] human oral metagenome; human oral
521
594
+
Asn
GTT
[ENA]
¢þ
>WENV183510663
OMHQ01001418
[OMHQ] human oral metagenome; human oral
526
452
-
Thr
GGT
[ENA]
¢þ
>WENV183510735
OMHQ01006017
[OMHQ] human oral metagenome; human oral
527
454
-
Cys
GCA
[ENA]
¢þ
>WENV183510741
OMHQ01007031
[OMHQ] human oral metagenome; human oral
541
614
+
Arg
ACG
[ENA]
¢þ
>WENV183510708
OMHQ01003868
[OMHQ] human oral metagenome; human oral
549
621
+
Thr
GGT
[ENA]
¢þ
>WENV183510724
OMHQ01004706
[OMHQ] human oral metagenome; human oral
549
623
+
Gln
TTG
[ENA]
¢þ
>WENV183510699
OMHQ01003389
[OMHQ] human oral metagenome; human oral
549
625
+
Thr
TGT
[ENA]
¢þ
>WENV183510742
OMHQ01007109
[OMHQ] human oral metagenome; human oral
558
634
+
Val
CAC
[ENA]
¢þ
>WENV183510721
OMHQ01004554
[OMHQ] human oral metagenome; human oral
560
633
+
Gln
TTG
[ENA]
¢þ
>WENV183510643
OMHQ01000045
[OMHQ] human oral metagenome; human oral
566
492
-
His
GTG
[ENA]
¢þ
>WENV183510732
OMHQ01005610
[OMHQ] human oral metagenome; human oral
570
644
+
Gln
TTG
[ENA]
¢þ
>WENV183510680
OMHQ01002231
[OMHQ] human oral metagenome; human oral
603
528
-
Leu
TAA
[ENA]
¢þ
>WENV183510691
OMHQ01003048
[OMHQ] human oral metagenome; human oral
619
535
-
Leu
TAG
[ENA]
¢þ
>WENV183510686
OMHQ01002596
[OMHQ] human oral metagenome; human oral
624
695
+
Gly
TCC
[ENA]
¢þ
>WENV183510656
OMHQ01000798
[OMHQ] human oral metagenome; human oral
627
551
-
His
GTG
[ENA]
¢þ
>WENV183510651
OMHQ01000473
[OMHQ] human oral metagenome; human oral
628
703
+
Val
TAC
[ENA]
¢þ
>WENV183510700
OMHQ01003389
[OMHQ] human oral metagenome; human oral
633
717
+
Tyr
GTA
[ENA]
¢þ
>WENV183510722
OMHQ01004554
[OMHQ] human oral metagenome; human oral
642
728
+
Leu
CAA
[ENA]
¢þ
>WENV183510710
OMHQ01003989
[OMHQ] human oral metagenome; human oral
646
719
+
Thr
CGT
[ENA]
¢þ
>WENV183510681
OMHQ01002245
[OMHQ] human oral metagenome; human oral
662
736
+
Pro
CGG
[ENA]
¢þ
>WENV183510689
OMHQ01002915
[OMHQ] human oral metagenome; human oral
685
758
+
Ala
GGC
[ENA]
¢þ
>WENV183510726
OMHQ01005377
[OMHQ] human oral metagenome; human oral
697
771
+
Leu
CAA
[ENA]
¢þ
>WENV183510734
OMHQ01006017
[OMHQ] human oral metagenome; human oral
702
630
-
Thr
TGT
[ENA]
¢þ
>WENV183510697
OMHQ01003309
[OMHQ] human oral metagenome; human oral
717
805
+
Ser
TGA
[ENA]
¢þ
>WENV183510688
OMHQ01002662
[OMHQ] human oral metagenome; human oral
733
807
+
Glu
CTC
[ENA]
¢þ
>WENV183510662
OMHQ01001418
[OMHQ] human oral metagenome; human oral
736
653
-
Tyr
GTA
[ENA]
¢þ
>WENV183510687
OMHQ01002596
[OMHQ] human oral metagenome; human oral
750
824
+
Pro
TGG
[ENA]
¢þ
>WENV183510642
OMHQ01000045
[OMHQ] human oral metagenome; human oral
755
682
-
His
GTG
[ENA]
¢þ
>WENV183510698
OMHQ01003309
[OMHQ] human oral metagenome; human oral
840
930
+
Ser
GCT
[ENA]
¢þ
>WENV183510695
OMHQ01003288
[OMHQ] human oral metagenome; human oral
844
918
+
Ile
GAT
[ENA]
¢þ
>WENV183510693
OMHQ01003108
[OMHQ] human oral metagenome; human oral
850
926
+
Lys
TTT
[ENA]
¢þ
>WENV183510661
OMHQ01001125
[OMHQ] human oral metagenome; human oral
862
789
-
Trp
CCA
[ENA]
¢þ
>WENV183510645
OMHQ01000119
[OMHQ] human oral metagenome; human oral
864
788
-
Pro
CGG
[ENA]
¢þ
>WENV183510679
OMHQ01002172
[OMHQ] human oral metagenome; human oral
878
803
-
Arg
ACG
[ENA]
¢þ
>WENV183510702
OMHQ01003626
[OMHQ] human oral metagenome; human oral
918
843
-
Ala
TGC
[ENA]
¢þ
>WENV183510696
OMHQ01003288
[OMHQ] human oral metagenome; human oral
927
1000
+
Ala
TGC
[ENA]
¢þ
>WENV183510694
OMHQ01003127
[OMHQ] human oral metagenome; human oral
928
999
+
Gly
CCC
[ENA]
¢þ
>WENV183510665
OMHQ01001474
[OMHQ] human oral metagenome; human oral
932
844
-
Leu
GAG
[ENA]
¢þ
>WENV183510653
OMHQ01000693
[OMHQ] human oral metagenome; human oral
947
1023
+
Lys
TTT
[ENA]
¢þ
>WENV183510667
OMHQ01001570
[OMHQ] human oral metagenome; human oral
970
896
-
Glu
CTC
[ENA]
¢þ
>WENV183510678
OMHQ01002172
[OMHQ] human oral metagenome; human oral
971
880
-
Ser
GCT
[ENA]
¢þ
>WENV183510666
OMHQ01001500
[OMHQ] human oral metagenome; human oral
974
900
-
Arg
TCT
[ENA]
¢þ
>WENV183510654
OMHQ01000746
[OMHQ] human oral metagenome; human oral
987
911
-
Met
CAT
[ENA]
¢þ
>WENV183510649
OMHQ01000413
[OMHQ] human oral metagenome; human oral
998
1082
+
Leu
CAG
[ENA]
¢þ
>WENV183510677
OMHQ01001952
[OMHQ] human oral metagenome; human oral
1008
1096
+
Ser
CGA
[ENA]
¢þ
>WENV183510659
OMHQ01001013
[OMHQ] human oral metagenome; human oral
1075
1001
-
Leu
CAA
[ENA]
¢þ
>WENV183510675
OMHQ01001843
[OMHQ] human oral metagenome; human oral
1177
1263
+
Ser
TGA
[ENA]
¢þ
>WENV183510670
OMHQ01001682
[OMHQ] human oral metagenome; human oral
1200
1275
+
Asn
GTT
[ENA]
¢þ
>WENV183510676
OMHQ01001898
[OMHQ] human oral metagenome; human oral
1256
1183
-
Trp
CCA
[ENA]
¢þ
>WENV183510672
OMHQ01001817
[OMHQ] human oral metagenome; human oral
1300
1227
-
Arg
CCT
[ENA]
¢þ
>WENV183510671
OMHQ01001682
[OMHQ] human oral metagenome; human oral
1315
1391
+
Gln
TTG
[ENA]
¢þ
>WENV183510660
OMHQ01001041
[OMHQ] human oral metagenome; human oral
1712
1640
-
Thr
GGT
[ENA]
¢þ
>WENV183510655
OMHQ01000760
[OMHQ] human oral metagenome; human oral
1781
1706
-
Val
CAC
[ENA]
¢þ
>WENV183510648
OMHQ01000147
[OMHQ] human oral metagenome; human oral
3432
3506
+
Pro
GGG
[ENA]
¢þ
>WENV183510646
OMHQ01000134
[OMHQ] human oral metagenome; human oral
3508
3599
+
Ile
TAT
[ENA]
¢þ
>WENV183510644
OMHQ01000047
[OMHQ] human oral metagenome; human oral
3535
3462
-
Lys
TTT
[ENA]
¢þ
>WENV183510647
OMHQ01000134
[OMHQ] human oral metagenome; human oral
3654
3736
+
Leu
TAA
[ENA]
¢þ
>WENV183510641
OMHQ01000020
[OMHQ] human oral metagenome; human oral
5928
6014
+
Ser
GGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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