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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OOFY] marine metagenome; sea ice
HIT:
65 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183623356
OOFY01000090
[OOFY] marine metagenome; sea ice
100
171
+
Asn
GTT
[ENA]
¢þ
>WENV183623403
OOFY01011977
[OOFY] marine metagenome; sea ice
106
179
+
Thr
TGT
[ENA]
¢þ
>WENV183623364
OOFY01000828
[OOFY] marine metagenome; sea ice
133
205
+
Phe
GAA
[ENA]
¢þ
>WENV183623379
OOFY01002821
[OOFY] marine metagenome; sea ice
134
210
+
Arg
ACG
[ENA]
¢þ
>WENV183623401
OOFY01010097
[OOFY] marine metagenome; sea ice
148
76
-
Ala
AGC
[ENA]
¢þ
>WENV183623395
OOFY01007644
[OOFY] marine metagenome; sea ice
180
265
+
Ser
TGA
[ENA]
¢þ
>WENV183623393
OOFY01007067
[OOFY] marine metagenome; sea ice
186
260
+
Asn
GTT
[ENA]
¢þ
>WENV183623390
OOFY01005757
[OOFY] marine metagenome; sea ice
196
271
+
Ala
TGC
[ENA]
¢þ
>WENV183623382
OOFY01003100
[OOFY] marine metagenome; sea ice
202
128
-
Met
CAT
[ENA]
¢þ
>WENV183623380
OOFY01003019
[OOFY] marine metagenome; sea ice
208
281
+
Gly
TCC
[ENA]
¢þ
>WENV183623397
OOFY01009293
[OOFY] marine metagenome; sea ice
219
132
-
Ser
GGA
[ENA]
¢þ
>WENV183623388
OOFY01004211
[OOFY] marine metagenome; sea ice
236
311
+
Lys
TTT
[ENA]
¢þ
>WENV183623371
OOFY01001245
[OOFY] marine metagenome; sea ice
268
184
-
Leu
CAA
[ENA]
¢þ
>WENV183623372
OOFY01001454
[OOFY] marine metagenome; sea ice
278
349
+
Thr
TGT
[ENA]
¢þ
>WENV183623383
OOFY01003142
[OOFY] marine metagenome; sea ice
293
367
+
Arg
CCT
[ENA]
¢þ
>WENV183623363
OOFY01000412
[OOFY] marine metagenome; sea ice
298
223
-
Thr
GGT
[ENA]
¢þ
>WENV183623399
OOFY01009983
[OOFY] marine metagenome; sea ice
307
395
+
Ser
GGA
[ENA]
¢þ
>WENV183623384
OOFY01003354
[OOFY] marine metagenome; sea ice
343
419
+
Pro
GGG
[ENA]
¢þ
>WENV183623381
OOFY01003019
[OOFY] marine metagenome; sea ice
346
418
+
Thr
GGT
[ENA]
¢þ
>WENV183623378
OOFY01002447
[OOFY] marine metagenome; sea ice
360
286
-
Ile2
CAT
[ENA]
¢þ
>WENV183623394
OOFY01007639
[OOFY] marine metagenome; sea ice
363
445
+
Leu
CAA
[ENA]
¢þ
>WENV183623362
OOFY01000412
[OOFY] marine metagenome; sea ice
383
310
-
Gly
TCC
[ENA]
¢þ
>WENV183623365
OOFY01001011
[OOFY] marine metagenome; sea ice
385
308
-
Ile
AAT
[ENA]
¢þ
>WENV183623357
OOFY01000180
[OOFY] marine metagenome; sea ice
385
313
-
Arg
CCG
[ENA]
¢þ
>WENV183623396
OOFY01008194
[OOFY] marine metagenome; sea ice
413
339
-
Met
CAT
[ENA]
¢þ
>WENV183623391
OOFY01006304
[OOFY] marine metagenome; sea ice
415
496
+
Ser
GCT
[ENA]
¢þ
>WENV183623398
OOFY01009906
[OOFY] marine metagenome; sea ice
418
492
+
Gln
TTG
[ENA]
¢þ
>WENV183623385
OOFY01003616
[OOFY] marine metagenome; sea ice
419
347
-
Sup
TCA
[ENA]
¢þ
>WENV183623400
OOFY01010043
[OOFY] marine metagenome; sea ice
430
354
-
His
GTG
[ENA]
¢þ
>WENV183623404
OOFY01012244
[OOFY] marine metagenome; sea ice
431
355
-
Arg
TCG
[ENA]
¢þ
>WENV183623370
OOFY01001216
[OOFY] marine metagenome; sea ice
448
524
+
Arg
CCG
[ENA]
¢þ
>WENV183623402
OOFY01011143
[OOFY] marine metagenome; sea ice
466
384
-
Leu
TAG
[ENA]
¢þ
>WENV183623377
OOFY01001882
[OOFY] marine metagenome; sea ice
470
396
-
Val
AAC
[ENA]
¢þ
>WENV183623387
OOFY01003880
[OOFY] marine metagenome; sea ice
475
401
-
Ala
TGC
[ENA]
¢þ
>WENV183623392
OOFY01006774
[OOFY] marine metagenome; sea ice
480
405
-
Val
GAC
[ENA]
¢þ
>WENV183623350
OOFY01000040
[OOFY] marine metagenome; sea ice
490
578
+
Ser
GCT
[ENA]
¢þ
>WENV183623361
OOFY01000412
[OOFY] marine metagenome; sea ice
500
416
-
Tyr
GTA
[ENA]
¢þ
>WENV183623375
OOFY01001454
[OOFY] marine metagenome; sea ice
500
428
-
Arg
TCT
[ENA]
¢þ
>WENV183623366
OOFY01001087
[OOFY] marine metagenome; sea ice
539
627
+
Ser
GCT
[ENA]
¢þ
>WENV183623389
OOFY01004491
[OOFY] marine metagenome; sea ice
556
629
+
Lys
CTT
[ENA]
¢þ
>WENV183623374
OOFY01001454
[OOFY] marine metagenome; sea ice
582
510
-
Val
TAC
[ENA]
¢þ
>WENV183623360
OOFY01000412
[OOFY] marine metagenome; sea ice
583
508
-
Thr
TGT
[ENA]
¢þ
>WENV183623376
OOFY01001882
[OOFY] marine metagenome; sea ice
603
676
+
Met
CAT
[ENA]
¢þ
>WENV183623386
OOFY01003880
[OOFY] marine metagenome; sea ice
631
557
-
Ile
GAT
[ENA]
¢þ
>WENV183623351
OOFY01000040
[OOFY] marine metagenome; sea ice
652
727
+
Asp
GTC
[ENA]
¢þ
>WENV183623367
OOFY01001087
[OOFY] marine metagenome; sea ice
671
748
+
Pro
TGG
[ENA]
¢þ
>WENV183623358
OOFY01000287
[OOFY] marine metagenome; sea ice
708
779
+
Lys
TTT
[ENA]
¢þ
>WENV183623373
OOFY01001454
[OOFY] marine metagenome; sea ice
719
802
+
Tyr
GTA
[ENA]
¢þ
>WENV183623369
OOFY01001139
[OOFY] marine metagenome; sea ice
777
704
-
Arg
TCT
[ENA]
¢þ
>WENV183623368
OOFY01001087
[OOFY] marine metagenome; sea ice
803
877
+
Arg
TCT
[ENA]
¢þ
>WENV183623359
OOFY01000369
[OOFY] marine metagenome; sea ice
1163
1239
+
Trp
CCA
[ENA]
¢þ
>WENV183623347
OOFY01000033
[OOFY] marine metagenome; sea ice
1332
1405
+
His
GTG
[ENA]
¢þ
>WENV183623354
OOFY01000067
[OOFY] marine metagenome; sea ice
1851
1924
+
Gln
TTG
[ENA]
¢þ
>WENV183623355
OOFY01000083
[OOFY] marine metagenome; sea ice
1988
1914
-
Trp
CCA
[ENA]
¢þ
>WENV183623344
OOFY01000008
[OOFY] marine metagenome; sea ice
2208
2283
+
Ala
TGC
[ENA]
¢þ
>WENV183623345
OOFY01000008
[OOFY] marine metagenome; sea ice
2307
2383
+
Ile
GAT
[ENA]
¢þ
>WENV183623353
OOFY01000047
[OOFY] marine metagenome; sea ice
2790
2703
-
Ser
TGA
[ENA]
¢þ
>WENV183623352
OOFY01000047
[OOFY] marine metagenome; sea ice
3403
3330
-
fMet
CAT
[ENA]
¢þ
>WENV183623346
OOFY01000018
[OOFY] marine metagenome; sea ice
3467
3537
+
Gly
TCC
[ENA]
¢þ
>WENV183623348
OOFY01000036
[OOFY] marine metagenome; sea ice
3966
4036
+
Cys
GCA
[ENA]
¢þ
>WENV183623349
OOFY01000036
[OOFY] marine metagenome; sea ice
4125
4210
+
Leu
TAA
[ENA]
¢þ
>WENV183623342
OOFY01000001
[OOFY] marine metagenome; sea ice
4766
4693
-
Ala
TGC
[ENA]
¢þ
>WENV183623341
OOFY01000001
[OOFY] marine metagenome; sea ice
4842
4769
-
Ile
GAT
[ENA]
¢þ
>WENV183623343
OOFY01000005
[OOFY] marine metagenome; sea ice
7073
6991
-
Leu
TAG
[ENA]
¢þ
>WENV183623340
OOFY01000001
[OOFY] marine metagenome; sea ice
8023
7948
-
Pro
TGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK