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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OOIR] human gut metagenome; Skin biopsy
HIT:
90 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183635074
OOIR01001336
[OOIR] human gut metagenome; Skin biopsy
6
79
+
Gly
CCC
[ENA]
¢þ
>WENV183635093
OOIR01003396
[OOIR] human gut metagenome; Skin biopsy
20
109
+
Ser
GGA
[ENA]
¢þ
>WENV183635080
OOIR01001565
[OOIR] human gut metagenome; Skin biopsy
88
12
-
Val
GAC
[ENA]
¢þ
>WENV183635073
OOIR01001236
[OOIR] human gut metagenome; Skin biopsy
88
12
-
Ile2
CAT
[ENA]
¢þ
>WENV183635091
OOIR01003082
[OOIR] human gut metagenome; Skin biopsy
91
16
-
Phe
GAA
[ENA]
¢þ
>WENV183635086
OOIR01002195
[OOIR] human gut metagenome; Skin biopsy
115
26
-
Ser
CGA
[ENA]
¢þ
>WENV183635072
OOIR01001111
[OOIR] human gut metagenome; Skin biopsy
140
64
-
fMet
CAT
[ENA]
¢þ
>WENV183635079
OOIR01001565
[OOIR] human gut metagenome; Skin biopsy
185
109
-
Val
GAC
[ENA]
¢þ
>WENV183635087
OOIR01002322
[OOIR] human gut metagenome; Skin biopsy
194
108
-
Cys
GCA
[ENA]
¢þ
>WENV183635056
OOIR01000037
[OOIR] human gut metagenome; Skin biopsy
257
332
+
Glu
TTC
[ENA]
¢þ
>WENV183635078
OOIR01001565
[OOIR] human gut metagenome; Skin biopsy
281
205
-
Val
GAC
[ENA]
¢þ
>WENV183635083
OOIR01001949
[OOIR] human gut metagenome; Skin biopsy
301
214
-
Ser
TGA
[ENA]
¢þ
>WENV183635090
OOIR01003052
[OOIR] human gut metagenome; Skin biopsy
305
379
+
Arg
CCT
[ENA]
¢þ
>WENV183635094
OOIR01003396
[OOIR] human gut metagenome; Skin biopsy
332
421
+
Ser
GGA
[ENA]
¢þ
>WENV183635071
OOIR01000973
[OOIR] human gut metagenome; Skin biopsy
334
410
+
Pro
TGG
[ENA]
¢þ
>WENV183635063
OOIR01000393
[OOIR] human gut metagenome; Skin biopsy
352
427
+
Gly
GCC
[ENA]
¢þ
>WENV183635088
OOIR01002811
[OOIR] human gut metagenome; Skin biopsy
392
484
+
Ser
GCT
[ENA]
¢þ
>WENV183635081
OOIR01001599
[OOIR] human gut metagenome; Skin biopsy
432
507
+
Ala
GGC
[ENA]
¢þ
>WENV183635085
OOIR01002076
[OOIR] human gut metagenome; Skin biopsy
436
361
-
Thr
TGT
[ENA]
¢þ
>WENV183635076
OOIR01001553
[OOIR] human gut metagenome; Skin biopsy
438
514
+
Arg
CCG
[ENA]
¢þ
>WENV183635092
OOIR01003323
[OOIR] human gut metagenome; Skin biopsy
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV183635089
OOIR01002811
[OOIR] human gut metagenome; Skin biopsy
488
564
+
Arg
ACG
[ENA]
¢þ
>WENV183635064
OOIR01000393
[OOIR] human gut metagenome; Skin biopsy
493
568
+
Gly
GCC
[ENA]
¢þ
>WENV183635084
OOIR01002076
[OOIR] human gut metagenome; Skin biopsy
530
443
-
Ser
TGA
[ENA]
¢þ
>WENV183635082
OOIR01001599
[OOIR] human gut metagenome; Skin biopsy
568
643
+
Ala
GGC
[ENA]
¢þ
>WENV183635077
OOIR01001553
[OOIR] human gut metagenome; Skin biopsy
574
649
+
His
GTG
[ENA]
¢þ
>WENV183635065
OOIR01000393
[OOIR] human gut metagenome; Skin biopsy
623
698
+
Gly
GCC
[ENA]
¢þ
>WENV183635068
OOIR01000693
[OOIR] human gut metagenome; Skin biopsy
640
556
-
Leu
CAA
[ENA]
¢þ
>WENV183635075
OOIR01001408
[OOIR] human gut metagenome; Skin biopsy
661
737
+
Ile
GAT
[ENA]
¢þ
>WENV183635070
OOIR01000879
[OOIR] human gut metagenome; Skin biopsy
733
658
-
Phe
GAA
[ENA]
¢þ
>WENV183635069
OOIR01000715
[OOIR] human gut metagenome; Skin biopsy
746
840
+
SeC
TCA
[ENA]
¢þ
>WENV183635067
OOIR01000564
[OOIR] human gut metagenome; Skin biopsy
895
819
-
fMet
CAT
[ENA]
¢þ
>WENV183635066
OOIR01000564
[OOIR] human gut metagenome; Skin biopsy
1042
956
-
Leu
GAG
[ENA]
¢þ
>WENV183635062
OOIR01000240
[OOIR] human gut metagenome; Skin biopsy
1117
1042
-
Asn
GTT
[ENA]
¢þ
>WENV183635057
OOIR01000164
[OOIR] human gut metagenome; Skin biopsy
1291
1367
+
Met
CAT
[ENA]
¢þ
>WENV183635058
OOIR01000164
[OOIR] human gut metagenome; Skin biopsy
1378
1462
+
Leu
TAG
[ENA]
¢þ
>WENV183635059
OOIR01000164
[OOIR] human gut metagenome; Skin biopsy
1492
1566
+
Gln
TTG
[ENA]
¢þ
>WENV183635060
OOIR01000164
[OOIR] human gut metagenome; Skin biopsy
1604
1680
+
Met
CAT
[ENA]
¢þ
>WENV183635061
OOIR01000164
[OOIR] human gut metagenome; Skin biopsy
1700
1774
+
Gln
CTG
[ENA]
¢þ
>WENV183635055
OOIR01000031
[OOIR] human gut metagenome; Skin biopsy
3373
3460
+
Ser
GCT
[ENA]
¢þ
>WENV183635054
OOIR01000025
[OOIR] human gut metagenome; Skin biopsy
5250
5175
-
Pro
TGG
[ENA]
¢þ
>WENV183635053
OOIR01000025
[OOIR] human gut metagenome; Skin biopsy
5439
5511
+
Gly
TCC
[ENA]
¢þ
>WENV183635052
OOIR01000022
[OOIR] human gut metagenome; Skin biopsy
6631
6717
+
Ser
GGA
[ENA]
¢þ
>WENV183635051
OOIR01000020
[OOIR] human gut metagenome; Skin biopsy
6989
6913
-
Leu
TAA
[ENA]
¢þ
>WENV183635039
OOIR01000013
[OOIR] human gut metagenome; Skin biopsy
12612
12539
-
Val
CAC
[ENA]
¢þ
>WENV183635033
OOIR01000013
[OOIR] human gut metagenome; Skin biopsy
14867
14940
+
Gly
GCC
[ENA]
¢þ
>WENV183635034
OOIR01000013
[OOIR] human gut metagenome; Skin biopsy
14988
15059
+
Cys
GCA
[ENA]
¢þ
>WENV183635035
OOIR01000013
[OOIR] human gut metagenome; Skin biopsy
15080
15152
+
Val
GAC
[ENA]
¢þ
>WENV183635036
OOIR01000013
[OOIR] human gut metagenome; Skin biopsy
15311
15384
+
Gly
GCC
[ENA]
¢þ
>WENV183635037
OOIR01000013
[OOIR] human gut metagenome; Skin biopsy
15439
15510
+
Cys
GCA
[ENA]
¢þ
>WENV183635038
OOIR01000013
[OOIR] human gut metagenome; Skin biopsy
15524
15598
+
Val
GAC
[ENA]
¢þ
>WENV183635029
OOIR01000011
[OOIR] human gut metagenome; Skin biopsy
18037
18111
+
Pro
GGG
[ENA]
¢þ
>WENV183635044
OOIR01000017
[OOIR] human gut metagenome; Skin biopsy
20334
20409
+
Arg
TCT
[ENA]
¢þ
>WENV183635013
OOIR01000002
[OOIR] human gut metagenome; Skin biopsy
22051
21962
-
Ser
CGA
[ENA]
¢þ
>WENV183635040
OOIR01000014
[OOIR] human gut metagenome; Skin biopsy
25009
25092
+
Tyr
GTA
[ENA]
¢þ
>WENV183635041
OOIR01000014
[OOIR] human gut metagenome; Skin biopsy
25257
25330
+
Thr
GGT
[ENA]
¢þ
>WENV183635042
OOIR01000014
[OOIR] human gut metagenome; Skin biopsy
25391
25467
+
Met
CAT
[ENA]
¢þ
>WENV183635043
OOIR01000014
[OOIR] human gut metagenome; Skin biopsy
47250
47323
+
Trp
CCA
[ENA]
¢þ
>WENV183635045
OOIR01000017
[OOIR] human gut metagenome; Skin biopsy
50615
50690
+
His
GTG
[ENA]
¢þ
>WENV183635050
OOIR01000020
[OOIR] human gut metagenome; Skin biopsy
52255
52183
-
Gln
TTG
[ENA]
¢þ
>WENV183635023
OOIR01000008
[OOIR] human gut metagenome; Skin biopsy
61910
61985
+
Thr
TGT
[ENA]
¢þ
>WENV183635048
OOIR01000017
[OOIR] human gut metagenome; Skin biopsy
67995
67921
-
Lys
CTT
[ENA]
¢þ
>WENV183635047
OOIR01000017
[OOIR] human gut metagenome; Skin biopsy
68196
68121
-
Lys
CTT
[ENA]
¢þ
>WENV183635046
OOIR01000017
[OOIR] human gut metagenome; Skin biopsy
69327
69410
+
Leu
TAG
[ENA]
¢þ
>WENV183635049
OOIR01000019
[OOIR] human gut metagenome; Skin biopsy
69434
69510
+
Pro
CGG
[ENA]
¢þ
>WENV183635032
OOIR01000012
[OOIR] human gut metagenome; Skin biopsy
86798
86723
-
Val
TAC
[ENA]
¢þ
>WENV183635028
OOIR01000010
[OOIR] human gut metagenome; Skin biopsy
89675
89601
-
Ala
GGC
[ENA]
¢þ
>WENV183635018
OOIR01000005
[OOIR] human gut metagenome; Skin biopsy
97320
97393
+
Arg
ACG
[ENA]
¢þ
>WENV183635019
OOIR01000005
[OOIR] human gut metagenome; Skin biopsy
97436
97510
+
Arg
CCG
[ENA]
¢þ
>WENV183635031
OOIR01000012
[OOIR] human gut metagenome; Skin biopsy
100783
100708
-
Ile2
CAT
[ENA]
¢þ
>WENV183635030
OOIR01000012
[OOIR] human gut metagenome; Skin biopsy
101413
101487
+
Asn
GTT
[ENA]
¢þ
>WENV183635014
OOIR01000003
[OOIR] human gut metagenome; Skin biopsy
127814
127888
+
Arg
CCG
[ENA]
¢þ
>WENV183635024
OOIR01000008
[OOIR] human gut metagenome; Skin biopsy
144959
145033
+
Arg
CCT
[ENA]
¢þ
>WENV183635022
OOIR01000006
[OOIR] human gut metagenome; Skin biopsy
155993
156067
+
fMet
CAT
[ENA]
¢þ
>WENV183635027
OOIR01000010
[OOIR] human gut metagenome; Skin biopsy
159245
159172
-
Glu
CTC
[ENA]
¢þ
>WENV183635026
OOIR01000010
[OOIR] human gut metagenome; Skin biopsy
159417
159345
-
Gln
CTG
[ENA]
¢þ
>WENV183635025
OOIR01000008
[OOIR] human gut metagenome; Skin biopsy
165236
165309
+
Ala
CGC
[ENA]
¢þ
>WENV183635021
OOIR01000005
[OOIR] human gut metagenome; Skin biopsy
177429
177342
-
Leu
GAG
[ENA]
¢þ
>WENV183635015
OOIR01000004
[OOIR] human gut metagenome; Skin biopsy
218159
218233
+
Ile
GAT
[ENA]
¢þ
>WENV183635016
OOIR01000004
[OOIR] human gut metagenome; Skin biopsy
218418
218493
+
Ala
TGC
[ENA]
¢þ
>WENV183635020
OOIR01000005
[OOIR] human gut metagenome; Skin biopsy
232139
232064
-
Leu
CAA
[ENA]
¢þ
>WENV183635017
OOIR01000004
[OOIR] human gut metagenome; Skin biopsy
234737
234821
+
Leu
CAG
[ENA]
¢þ
>WENV183635012
OOIR01000001
[OOIR] human gut metagenome; Skin biopsy
238370
238295
-
Thr
CGT
[ENA]
¢þ
>WENV183635005
OOIR01000001
[OOIR] human gut metagenome; Skin biopsy
321604
321677
+
Lys
TTT
[ENA]
¢þ
>WENV183635006
OOIR01000001
[OOIR] human gut metagenome; Skin biopsy
350182
350255
+
Glu
TTC
[ENA]
¢þ
>WENV183635007
OOIR01000001
[OOIR] human gut metagenome; Skin biopsy
350418
350492
+
Asp
GTC
[ENA]
¢þ
>WENV183635008
OOIR01000001
[OOIR] human gut metagenome; Skin biopsy
518392
518463
+
Gly
CCC
[ENA]
¢þ
>WENV183635011
OOIR01000001
[OOIR] human gut metagenome; Skin biopsy
543257
543184
-
Arg
ACG
[ENA]
¢þ
>WENV183635010
OOIR01000001
[OOIR] human gut metagenome; Skin biopsy
545892
545803
-
Ser
GCT
[ENA]
¢þ
>WENV183635009
OOIR01000001
[OOIR] human gut metagenome; Skin biopsy
549264
549177
-
Ser
TGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK