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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OUML] metagenome; soil
HIT:
29 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183696822
OUML01000012
[OUML] metagenome; soil
812
738
-
Glu
CTC
[ENA]
¢þ
>WENV183696842
OUML01000044
[OUML] metagenome; soil
2800
2874
+
Gln
TTG
[ENA]
¢þ
>WENV183696821
OUML01000007
[OUML] metagenome; soil
2879
2803
-
Ala
GGC
[ENA]
¢þ
>WENV183696823
OUML01000015
[OUML] metagenome; soil
2914
3000
+
Leu
CAA
[ENA]
¢þ
>WENV183696844
OUML01000045
[OUML] metagenome; soil
3012
2926
-
Leu
GAG
[ENA]
¢þ
>WENV183696843
OUML01000045
[OUML] metagenome; soil
3118
3194
+
Val
TAC
[ENA]
¢þ
>WENV183696841
OUML01000037
[OUML] metagenome; soil
4203
4129
-
Asn
GTT
[ENA]
¢þ
>WENV183696819
OUML01000004
[OUML] metagenome; soil
4362
4288
-
Trp
CCA
[ENA]
¢þ
>WENV183696835
OUML01000030
[OUML] metagenome; soil
4575
4499
-
Lys
CTT
[ENA]
¢þ
>WENV183696826
OUML01000016
[OUML] metagenome; soil
7417
7342
-
Thr
GGT
[ENA]
¢þ
>WENV183696847
OUML01000046
[OUML] metagenome; soil
8636
8561
-
Ile2
CAT
[ENA]
¢þ
>WENV183696824
OUML01000016
[OUML] metagenome; soil
8850
8926
+
Thr
TGT
[ENA]
¢þ
>WENV183696825
OUML01000016
[OUML] metagenome; soil
8978
9062
+
Tyr
GTA
[ENA]
¢þ
>WENV183696820
OUML01000007
[OUML] metagenome; soil
9134
9048
-
Leu
TAA
[ENA]
¢þ
>WENV183696828
OUML01000021
[OUML] metagenome; soil
10477
10553
+
Arg
CCT
[ENA]
¢þ
>WENV183696846
OUML01000046
[OUML] metagenome; soil
10805
10728
-
fMet
CAT
[ENA]
¢þ
>WENV183696831
OUML01000021
[OUML] metagenome; soil
15023
14946
-
Asp
GTC
[ENA]
¢þ
>WENV183696829
OUML01000021
[OUML] metagenome; soil
15176
15251
+
Thr
CGT
[ENA]
¢þ
>WENV183696845
OUML01000046
[OUML] metagenome; soil
15489
15413
-
Met
CAT
[ENA]
¢þ
>WENV183696827
OUML01000018
[OUML] metagenome; soil
15953
15879
-
Phe
GAA
[ENA]
¢þ
>WENV183696830
OUML01000021
[OUML] metagenome; soil
18280
18204
-
Val
GAC
[ENA]
¢þ
>WENV183696836
OUML01000031
[OUML] metagenome; soil
22501
22588
+
Ser
TGA
[ENA]
¢þ
>WENV183696837
OUML01000031
[OUML] metagenome; soil
23245
23337
+
Ser
GCT
[ENA]
¢þ
>WENV183696838
OUML01000031
[OUML] metagenome; soil
24874
24950
+
Arg
GCG
[ENA]
¢þ
>WENV183696839
OUML01000031
[OUML] metagenome; soil
25075
25162
+
Ser
CGA
[ENA]
¢þ
>WENV183696832
OUML01000026
[OUML] metagenome; soil
37350
37426
+
Lys
TTT
[ENA]
¢þ
>WENV183696840
OUML01000031
[OUML] metagenome; soil
44381
44472
+
Ser
GGA
[ENA]
¢þ
>WENV183696834
OUML01000026
[OUML] metagenome; soil
44891
44815
-
His
GTG
[ENA]
¢þ
>WENV183696833
OUML01000026
[OUML] metagenome; soil
44978
45052
+
Gly
TCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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