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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[POYE] biofilm metagenome; steel pipe from biofilm reactor
HIT:
139 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183746562
POYE01011109
[POYE] biofilm metagenome; steel pipe from biofilm reactor
1
74
+
Gly
CCC
[ENA]
¢þ
>WENV183746593
POYE01031357
[POYE] biofilm metagenome; steel pipe from biofilm reactor
1
74
+
Val
TAC
[ENA]
¢þ
>WENV183746549
POYE01005812
[POYE] biofilm metagenome; steel pipe from biofilm reactor
3
92
+
Ser
CGA
[ENA]
¢þ
>WENV183746645
POYE01046765
[POYE] biofilm metagenome; steel pipe from biofilm reactor
24
108
+
Leu
TAA
[ENA]
¢þ
>WENV183746605
POYE01036291
[POYE] biofilm metagenome; steel pipe from biofilm reactor
31
115
+
Leu
CAG
[ENA]
¢þ
>WENV183746603
POYE01036239
[POYE] biofilm metagenome; steel pipe from biofilm reactor
44
133
+
Tyr
GTA
[ENA]
¢þ
>WENV183746664
POYE01061798
[POYE] biofilm metagenome; steel pipe from biofilm reactor
72
147
+
Gly
GCC
[ENA]
¢þ
>WENV183746624
POYE01038460
[POYE] biofilm metagenome; steel pipe from biofilm reactor
73
1
-
Val
CAC
[ENA]
¢þ
>WENV183746672
POYE01065993
[POYE] biofilm metagenome; steel pipe from biofilm reactor
74
1
-
Gln
CTG
[ENA]
¢þ
>WENV183746604
POYE01036269
[POYE] biofilm metagenome; steel pipe from biofilm reactor
74
1
-
Ala
GGC
[ENA]
¢þ
>WENV183746650
POYE01048786
[POYE] biofilm metagenome; steel pipe from biofilm reactor
75
1
-
Pro
CGG
[ENA]
¢þ
>WENV183746541
POYE01003193
[POYE] biofilm metagenome; steel pipe from biofilm reactor
75
1
-
Pro
CGG
[ENA]
¢þ
>WENV183746574
POYE01019396
[POYE] biofilm metagenome; steel pipe from biofilm reactor
75
148
+
Cys
GCA
[ENA]
¢þ
>WENV183746592
POYE01031026
[POYE] biofilm metagenome; steel pipe from biofilm reactor
76
3
-
Cys
GCA
[ENA]
¢þ
>WENV183746622
POYE01036740
[POYE] biofilm metagenome; steel pipe from biofilm reactor
76
149
+
Gln
CTG
[ENA]
¢þ
>WENV183746570
POYE01018253
[POYE] biofilm metagenome; steel pipe from biofilm reactor
78
2
-
Met
CAT
[ENA]
¢þ
>WENV183746571
POYE01018846
[POYE] biofilm metagenome; steel pipe from biofilm reactor
80
5
-
Val
TAC
[ENA]
¢þ
>WENV183746665
POYE01061956
[POYE] biofilm metagenome; steel pipe from biofilm reactor
83
9
-
Thr
CGT
[ENA]
¢þ
>WENV183746627
POYE01040159
[POYE] biofilm metagenome; steel pipe from biofilm reactor
84
1
-
Leu
CAG
[ENA]
¢þ
>WENV183746670
POYE01064713
[POYE] biofilm metagenome; steel pipe from biofilm reactor
85
1
-
Leu
CAA
[ENA]
¢þ
>WENV183746669
POYE01064471
[POYE] biofilm metagenome; steel pipe from biofilm reactor
90
162
+
Arg
CCT
[ENA]
¢þ
>WENV183746591
POYE01030372
[POYE] biofilm metagenome; steel pipe from biofilm reactor
91
2
-
Ser
CGA
[ENA]
¢þ
>WENV183746534
POYE01000413
[POYE] biofilm metagenome; steel pipe from biofilm reactor
93
176
+
Tyr
GTA
[ENA]
¢þ
>WENV183746576
POYE01020278
[POYE] biofilm metagenome; steel pipe from biofilm reactor
100
24
-
Arg
TCT
[ENA]
¢þ
>WENV183746659
POYE01058889
[POYE] biofilm metagenome; steel pipe from biofilm reactor
106
179
+
His
GTG
[ENA]
¢þ
>WENV183746578
POYE01021707
[POYE] biofilm metagenome; steel pipe from biofilm reactor
108
33
-
Arg
TCT
[ENA]
¢þ
>WENV183746628
POYE01040540
[POYE] biofilm metagenome; steel pipe from biofilm reactor
114
200
+
Leu
TAA
[ENA]
¢þ
>WENV183746553
POYE01007092
[POYE] biofilm metagenome; steel pipe from biofilm reactor
124
49
-
Thr
TGT
[ENA]
¢þ
>WENV183746606
POYE01036291
[POYE] biofilm metagenome; steel pipe from biofilm reactor
126
201
+
Trp
CCA
[ENA]
¢þ
>WENV183746598
POYE01033742
[POYE] biofilm metagenome; steel pipe from biofilm reactor
126
202
+
Met
CAT
[ENA]
¢þ
>WENV183746582
POYE01022778
[POYE] biofilm metagenome; steel pipe from biofilm reactor
127
46
-
Leu
TAA
[ENA]
¢þ
>WENV183746547
POYE01004253
[POYE] biofilm metagenome; steel pipe from biofilm reactor
132
59
-
Asn
GTT
[ENA]
¢þ
>WENV183746633
POYE01043103
[POYE] biofilm metagenome; steel pipe from biofilm reactor
136
208
+
Gln
TTG
[ENA]
¢þ
>WENV183746642
POYE01044710
[POYE] biofilm metagenome; steel pipe from biofilm reactor
141
212
+
Gln
TTG
[ENA]
¢þ
>WENV183746634
POYE01043404
[POYE] biofilm metagenome; steel pipe from biofilm reactor
146
220
+
Pro
TGG
[ENA]
¢þ
>WENV183746630
POYE01041188
[POYE] biofilm metagenome; steel pipe from biofilm reactor
149
73
-
Thr
TGT
[ENA]
¢þ
>WENV183746538
POYE01000522
[POYE] biofilm metagenome; steel pipe from biofilm reactor
159
234
+
Val
TAC
[ENA]
¢þ
>WENV183746651
POYE01049103
[POYE] biofilm metagenome; steel pipe from biofilm reactor
165
238
+
Gln
CTG
[ENA]
¢þ
>WENV183746563
POYE01012377
[POYE] biofilm metagenome; steel pipe from biofilm reactor
177
251
+
Pro
GGG
[ENA]
¢þ
>WENV183746599
POYE01034497
[POYE] biofilm metagenome; steel pipe from biofilm reactor
180
107
-
Arg
CCT
[ENA]
¢þ
>WENV183746535
POYE01000413
[POYE] biofilm metagenome; steel pipe from biofilm reactor
206
279
+
Cys
GCA
[ENA]
¢þ
>WENV183746660
POYE01058889
[POYE] biofilm metagenome; steel pipe from biofilm reactor
209
283
+
Met
CAT
[ENA]
¢þ
>WENV183746640
POYE01043955
[POYE] biofilm metagenome; steel pipe from biofilm reactor
222
150
-
Met
CAT
[ENA]
¢þ
>WENV183746543
POYE01003866
[POYE] biofilm metagenome; steel pipe from biofilm reactor
223
147
-
Ala
TGC
[ENA]
¢þ
>WENV183746601
POYE01035908
[POYE] biofilm metagenome; steel pipe from biofilm reactor
226
318
+
SeC
TCA
[ENA]
¢þ
>WENV183746573
POYE01019322
[POYE] biofilm metagenome; steel pipe from biofilm reactor
243
169
-
Asp
GTC
[ENA]
¢þ
>WENV183746632
POYE01042257
[POYE] biofilm metagenome; steel pipe from biofilm reactor
247
341
+
SeC
TCA
[ENA]
¢þ
>WENV183746551
POYE01006383
[POYE] biofilm metagenome; steel pipe from biofilm reactor
263
191
-
Val
TAC
[ENA]
¢þ
>WENV183746658
POYE01058774
[POYE] biofilm metagenome; steel pipe from biofilm reactor
272
344
+
Arg
CCG
[ENA]
¢þ
>WENV183746572
POYE01019127
[POYE] biofilm metagenome; steel pipe from biofilm reactor
280
185
-
SeC
TCA
[ENA]
¢þ
>WENV183746595
POYE01032265
[POYE] biofilm metagenome; steel pipe from biofilm reactor
287
214
-
Gly
CCC
[ENA]
¢þ
>WENV183746537
POYE01000492
[POYE] biofilm metagenome; steel pipe from biofilm reactor
294
206
-
Ser
GGA
[ENA]
¢þ
>WENV183746641
POYE01044040
[POYE] biofilm metagenome; steel pipe from biofilm reactor
300
373
+
His
GTG
[ENA]
¢þ
>WENV183746536
POYE01000413
[POYE] biofilm metagenome; steel pipe from biofilm reactor
306
382
+
Asn
GTT
[ENA]
¢þ
>WENV183746629
POYE01040856
[POYE] biofilm metagenome; steel pipe from biofilm reactor
312
388
+
Ile2
CAT
[ENA]
¢þ
>WENV183746546
POYE01004253
[POYE] biofilm metagenome; steel pipe from biofilm reactor
324
252
-
Val
TAC
[ENA]
¢þ
>WENV183746575
POYE01019675
[POYE] biofilm metagenome; steel pipe from biofilm reactor
326
253
-
Gln
TTG
[ENA]
¢þ
>WENV183746561
POYE01011079
[POYE] biofilm metagenome; steel pipe from biofilm reactor
331
423
+
SeC
TCA
[ENA]
¢þ
>WENV183746577
POYE01021425
[POYE] biofilm metagenome; steel pipe from biofilm reactor
338
248
-
Ser
GCT
[ENA]
¢þ
>WENV183746639
POYE01043955
[POYE] biofilm metagenome; steel pipe from biofilm reactor
352
280
-
Lys
TTT
[ENA]
¢þ
>WENV183746564
POYE01012762
[POYE] biofilm metagenome; steel pipe from biofilm reactor
353
426
+
Gly
CCC
[ENA]
¢þ
>WENV183746550
POYE01006166
[POYE] biofilm metagenome; steel pipe from biofilm reactor
368
441
+
Gln
CTG
[ENA]
¢þ
>WENV183746635
POYE01043488
[POYE] biofilm metagenome; steel pipe from biofilm reactor
377
452
+
Thr
TGT
[ENA]
¢þ
>WENV183746542
POYE01003866
[POYE] biofilm metagenome; steel pipe from biofilm reactor
380
306
-
Ile
GAT
[ENA]
¢þ
>WENV183746586
POYE01025502
[POYE] biofilm metagenome; steel pipe from biofilm reactor
384
314
-
Gly
TCC
[ENA]
¢þ
>WENV183746568
POYE01016672
[POYE] biofilm metagenome; steel pipe from biofilm reactor
390
315
-
Phe
GAA
[ENA]
¢þ
>WENV183746579
POYE01021785
[POYE] biofilm metagenome; steel pipe from biofilm reactor
391
317
-
Leu
TAA
[ENA]
¢þ
>WENV183746607
POYE01036291
[POYE] biofilm metagenome; steel pipe from biofilm reactor
392
470
+
fMet
CAT
[ENA]
¢þ
>WENV183746643
POYE01046091
[POYE] biofilm metagenome; steel pipe from biofilm reactor
400
483
+
Tyr
GTA
[ENA]
¢þ
>WENV183746581
POYE01022778
[POYE] biofilm metagenome; steel pipe from biofilm reactor
402
331
-
Glu
TTC
[ENA]
¢þ
>WENV183746555
POYE01009021
[POYE] biofilm metagenome; steel pipe from biofilm reactor
402
489
+
Ser
TGA
[ENA]
¢þ
>WENV183746667
POYE01063142
[POYE] biofilm metagenome; steel pipe from biofilm reactor
409
333
-
Arg
ACG
[ENA]
¢þ
>WENV183746597
POYE01032979
[POYE] biofilm metagenome; steel pipe from biofilm reactor
410
505
+
SeC
TCA
[ENA]
¢þ
>WENV183746619
POYE01036561
[POYE] biofilm metagenome; steel pipe from biofilm reactor
418
344
-
Asn
GTT
[ENA]
¢þ
>WENV183746638
POYE01043955
[POYE] biofilm metagenome; steel pipe from biofilm reactor
443
372
-
Asn
GTT
[ENA]
¢þ
>WENV183746560
POYE01009079
[POYE] biofilm metagenome; steel pipe from biofilm reactor
447
360
-
Leu
GAG
[ENA]
¢þ
>WENV183746620
POYE01036592
[POYE] biofilm metagenome; steel pipe from biofilm reactor
450
522
+
His
GTG
[ENA]
¢þ
>WENV183746626
POYE01039866
[POYE] biofilm metagenome; steel pipe from biofilm reactor
453
363
-
Ser
GGA
[ENA]
¢þ
>WENV183746596
POYE01032589
[POYE] biofilm metagenome; steel pipe from biofilm reactor
456
527
+
Lys
TTT
[ENA]
¢þ
>WENV183746647
POYE01047928
[POYE] biofilm metagenome; steel pipe from biofilm reactor
472
388
-
Leu
TAG
[ENA]
¢þ
>WENV183746608
POYE01036291
[POYE] biofilm metagenome; steel pipe from biofilm reactor
477
553
+
Gln
TTG
[ENA]
¢þ
>WENV183746590
POYE01029823
[POYE] biofilm metagenome; steel pipe from biofilm reactor
490
566
+
Arg
TCT
[ENA]
¢þ
>WENV183746545
POYE01004253
[POYE] biofilm metagenome; steel pipe from biofilm reactor
495
423
-
Glu
TTC
[ENA]
¢þ
>WENV183746636
POYE01043820
[POYE] biofilm metagenome; steel pipe from biofilm reactor
520
449
-
Gly
TCC
[ENA]
¢þ
>WENV183746621
POYE01036592
[POYE] biofilm metagenome; steel pipe from biofilm reactor
527
608
+
Leu
TAA
[ENA]
¢þ
>WENV183746656
POYE01052434
[POYE] biofilm metagenome; steel pipe from biofilm reactor
527
616
+
Ser
TGA
[ENA]
¢þ
>WENV183746559
POYE01009079
[POYE] biofilm metagenome; steel pipe from biofilm reactor
529
454
-
Val
TAC
[ENA]
¢þ
>WENV183746580
POYE01021800
[POYE] biofilm metagenome; steel pipe from biofilm reactor
532
607
+
Leu
TAA
[ENA]
¢þ
>WENV183746609
POYE01036291
[POYE] biofilm metagenome; steel pipe from biofilm reactor
570
646
+
Pro
TGG
[ENA]
¢þ
>WENV183746552
POYE01006757
[POYE] biofilm metagenome; steel pipe from biofilm reactor
602
516
-
Leu
TAA
[ENA]
¢þ
>WENV183746671
POYE01065121
[POYE] biofilm metagenome; steel pipe from biofilm reactor
606
517
-
Ser
GGA
[ENA]
¢þ
>WENV183746637
POYE01043955
[POYE] biofilm metagenome; steel pipe from biofilm reactor
612
541
-
Arg
ACG
[ENA]
¢þ
>WENV183746558
POYE01009079
[POYE] biofilm metagenome; steel pipe from biofilm reactor
615
540
-
Lys
TTT
[ENA]
¢þ
>WENV183746602
POYE01036089
[POYE] biofilm metagenome; steel pipe from biofilm reactor
617
543
-
Asn
GTT
[ENA]
¢þ
>WENV183746648
POYE01048260
[POYE] biofilm metagenome; steel pipe from biofilm reactor
650
725
+
Val
CAC
[ENA]
¢þ
>WENV183746625
POYE01039256
[POYE] biofilm metagenome; steel pipe from biofilm reactor
652
725
+
Gly
TCC
[ENA]
¢þ
>WENV183746600
POYE01034504
[POYE] biofilm metagenome; steel pipe from biofilm reactor
681
755
+
Arg
CCG
[ENA]
¢þ
>WENV183746557
POYE01009079
[POYE] biofilm metagenome; steel pipe from biofilm reactor
698
623
-
Met
CAT
[ENA]
¢þ
>WENV183746554
POYE01008518
[POYE] biofilm metagenome; steel pipe from biofilm reactor
716
792
+
Ile2
CAT
[ENA]
¢þ
>WENV183746623
POYE01037983
[POYE] biofilm metagenome; steel pipe from biofilm reactor
724
651
-
Arg
CCG
[ENA]
¢þ
>WENV183746610
POYE01036291
[POYE] biofilm metagenome; steel pipe from biofilm reactor
741
829
+
Ser
GCT
[ENA]
¢þ
>WENV183746644
POYE01046628
[POYE] biofilm metagenome; steel pipe from biofilm reactor
777
850
+
Asn
GTT
[ENA]
¢þ
>WENV183746585
POYE01025502
[POYE] biofilm metagenome; steel pipe from biofilm reactor
795
711
-
Tyr
GTA
[ENA]
¢þ
>WENV183746569
POYE01017679
[POYE] biofilm metagenome; steel pipe from biofilm reactor
832
756
-
Thr
CGT
[ENA]
¢þ
>WENV183746654
POYE01051011
[POYE] biofilm metagenome; steel pipe from biofilm reactor
902
818
-
Leu
TAG
[ENA]
¢þ
>WENV183746588
POYE01026963
[POYE] biofilm metagenome; steel pipe from biofilm reactor
902
975
+
Gly
TCC
[ENA]
¢þ
>WENV183746611
POYE01036291
[POYE] biofilm metagenome; steel pipe from biofilm reactor
931
1005
+
Asp
GTC
[ENA]
¢þ
>WENV183746612
POYE01036291
[POYE] biofilm metagenome; steel pipe from biofilm reactor
1013
1088
+
Phe
GAA
[ENA]
¢þ
>WENV183746540
POYE01001042
[POYE] biofilm metagenome; steel pipe from biofilm reactor
1033
958
-
Trp
CCA
[ENA]
¢þ
>WENV183746565
POYE01014852
[POYE] biofilm metagenome; steel pipe from biofilm reactor
1043
1119
+
Pro
CGG
[ENA]
¢þ
>WENV183746631
POYE01041828
[POYE] biofilm metagenome; steel pipe from biofilm reactor
1167
1240
+
Gly
CCC
[ENA]
¢þ
>WENV183746584
POYE01024195
[POYE] biofilm metagenome; steel pipe from biofilm reactor
1188
1114
-
Gln
TTG
[ENA]
¢þ
>WENV183746613
POYE01036291
[POYE] biofilm metagenome; steel pipe from biofilm reactor
1197
1288
+
Ser
GGA
[ENA]
¢þ
>WENV183746583
POYE01023273
[POYE] biofilm metagenome; steel pipe from biofilm reactor
1202
1130
-
Ile
GAT
[ENA]
¢þ
>WENV183746653
POYE01050994
[POYE] biofilm metagenome; steel pipe from biofilm reactor
1204
1279
+
Leu
CAA
[ENA]
¢þ
>WENV183746663
POYE01060682
[POYE] biofilm metagenome; steel pipe from biofilm reactor
1311
1239
-
Gln
TTG
[ENA]
¢þ
>WENV183746614
POYE01036291
[POYE] biofilm metagenome; steel pipe from biofilm reactor
1315
1406
+
Ser
CGA
[ENA]
¢þ
>WENV183746615
POYE01036291
[POYE] biofilm metagenome; steel pipe from biofilm reactor
1421
1498
+
Arg
ACG
[ENA]
¢þ
>WENV183746587
POYE01026044
[POYE] biofilm metagenome; steel pipe from biofilm reactor
1456
1542
+
Leu
GAG
[ENA]
¢þ
>WENV183746616
POYE01036291
[POYE] biofilm metagenome; steel pipe from biofilm reactor
1511
1597
+
Tyr
GTA
[ENA]
¢þ
>WENV183746566
POYE01016034
[POYE] biofilm metagenome; steel pipe from biofilm reactor
1517
1601
+
Leu
TAA
[ENA]
¢þ
>WENV183746652
POYE01049823
[POYE] biofilm metagenome; steel pipe from biofilm reactor
1566
1638
+
Phe
GAA
[ENA]
¢þ
>WENV183746657
POYE01053336
[POYE] biofilm metagenome; steel pipe from biofilm reactor
1618
1544
-
Arg
TCT
[ENA]
¢þ
>WENV183746539
POYE01000783
[POYE] biofilm metagenome; steel pipe from biofilm reactor
1694
1768
+
Arg
CCT
[ENA]
¢þ
>WENV183746617
POYE01036291
[POYE] biofilm metagenome; steel pipe from biofilm reactor
1697
1783
+
Cys
GCA
[ENA]
¢þ
>WENV183746544
POYE01004134
[POYE] biofilm metagenome; steel pipe from biofilm reactor
1755
1830
+
Thr
CGT
[ENA]
¢þ
>WENV183746567
POYE01016295
[POYE] biofilm metagenome; steel pipe from biofilm reactor
1947
2019
+
Gln
CTG
[ENA]
¢þ
>WENV183746618
POYE01036291
[POYE] biofilm metagenome; steel pipe from biofilm reactor
2108
2184
+
Asn
GTT
[ENA]
¢þ
>WENV183746655
POYE01052366
[POYE] biofilm metagenome; steel pipe from biofilm reactor
2170
2087
-
Leu
TAG
[ENA]
¢þ
>WENV183746668
POYE01063391
[POYE] biofilm metagenome; steel pipe from biofilm reactor
2201
2127
-
Thr
TGT
[ENA]
¢þ
>WENV183746594
POYE01031478
[POYE] biofilm metagenome; steel pipe from biofilm reactor
2367
2442
+
Arg
ACG
[ENA]
¢þ
>WENV183746589
POYE01029576
[POYE] biofilm metagenome; steel pipe from biofilm reactor
2434
2509
+
Asn
GTT
[ENA]
¢þ
>WENV183746649
POYE01048603
[POYE] biofilm metagenome; steel pipe from biofilm reactor
2503
2578
+
Pro
GGG
[ENA]
¢þ
>WENV183746548
POYE01005015
[POYE] biofilm metagenome; steel pipe from biofilm reactor
2690
2616
-
Lys
TTT
[ENA]
¢þ
>WENV183746556
POYE01009054
[POYE] biofilm metagenome; steel pipe from biofilm reactor
3821
3896
+
Thr
CGT
[ENA]
¢þ
>WENV183746662
POYE01060313
[POYE] biofilm metagenome; steel pipe from biofilm reactor
4254
4179
-
Arg
TCT
[ENA]
¢þ
>WENV183746661
POYE01060313
[POYE] biofilm metagenome; steel pipe from biofilm reactor
6453
6528
+
His
GTG
[ENA]
¢þ
>WENV183746666
POYE01062046
[POYE] biofilm metagenome; steel pipe from biofilm reactor
8304
8231
-
Val
TAC
[ENA]
¢þ
>WENV183746646
POYE01046893
[POYE] biofilm metagenome; steel pipe from biofilm reactor
8872
8799
-
His
GTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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