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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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tRNA gene List
[AZMM] human gut metagenome; premature infant gut
HIT:
110 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170016565
AZMM01001025
[AZMM] human gut metagenome; premature infant gut
1
76
+
Met
CAT
[ENA]
¢þ
>WENV170016553
AZMM01000397
[AZMM] human gut metagenome; premature infant gut
1
76
+
Val
TAC
[ENA]
¢þ
>WENV170016596
AZMM01007008
[AZMM] human gut metagenome; premature infant gut
2
74
+
Gln
CTG
[ENA]
¢þ
>WENV170016559
AZMM01000874
[AZMM] human gut metagenome; premature infant gut
2
77
+
Asn
GTT
[ENA]
¢þ
>WENV170016594
AZMM01005759
[AZMM] human gut metagenome; premature infant gut
7
93
+
Leu
CAG
[ENA]
¢þ
>WENV170016585
AZMM01003363
[AZMM] human gut metagenome; premature infant gut
8
82
+
Gly
GCC
[ENA]
¢þ
>WENV170016550
AZMM01000275
[AZMM] human gut metagenome; premature infant gut
11
86
+
Val
TAC
[ENA]
¢þ
>WENV170016573
AZMM01001947
[AZMM] human gut metagenome; premature infant gut
12
86
+
Val
TAC
[ENA]
¢þ
>WENV170016601
AZMM01008877
[AZMM] human gut metagenome; premature infant gut
19
113
+
SeC(p)
TCA
[ENA]
¢þ
>WENV170016610
AZMM01013596
[AZMM] human gut metagenome; premature infant gut
25
99
+
Gly
TCC
[ENA]
¢þ
>WENV170016611
AZMM01014521
[AZMM] human gut metagenome; premature infant gut
30
105
+
Trp
CCA
[ENA]
¢þ
>WENV170016613
AZMM01015597
[AZMM] human gut metagenome; premature infant gut
42
116
+
Arg
CCT
[ENA]
¢þ
>WENV170016607
AZMM01012627
[AZMM] human gut metagenome; premature infant gut
45
120
+
Thr
GGT
[ENA]
¢þ
>WENV170016582
AZMM01002239
[AZMM] human gut metagenome; premature infant gut
49
124
+
Lys
TTT
[ENA]
¢þ
>WENV170016570
AZMM01001696
[AZMM] human gut metagenome; premature infant gut
54
128
+
Glu
TTC
[ENA]
¢þ
>WENV170016591
AZMM01004307
[AZMM] human gut metagenome; premature infant gut
59
134
+
Thr
CGT
[ENA]
¢þ
>WENV170016602
AZMM01009347
[AZMM] human gut metagenome; premature infant gut
65
152
+
Ser
CGA
[ENA]
¢þ
>WENV170016587
AZMM01003512
[AZMM] human gut metagenome; premature infant gut
70
145
+
Asp
GTC
[ENA]
¢þ
>WENV170016581
AZMM01002180
[AZMM] human gut metagenome; premature infant gut
75
1
-
Val
TAC
[ENA]
¢þ
>WENV170016568
AZMM01001084
[AZMM] human gut metagenome; premature infant gut
78
4
-
Met
CAT
[ENA]
¢þ
>WENV170016555
AZMM01000459
[AZMM] human gut metagenome; premature infant gut
78
153
+
Val
TAC
[ENA]
¢þ
>WENV170016554
AZMM01000397
[AZMM] human gut metagenome; premature infant gut
81
156
+
Lys
TTT
[ENA]
¢þ
>WENV170016566
AZMM01001025
[AZMM] human gut metagenome; premature infant gut
82
158
+
Met
CAT
[ENA]
¢þ
>WENV170016560
AZMM01000874
[AZMM] human gut metagenome; premature infant gut
83
158
+
Lys
TTT
[ENA]
¢þ
>WENV170016542
AZMM01000155
[AZMM] human gut metagenome; premature infant gut
88
3
-
Leu
GAG
[ENA]
¢þ
>WENV170016545
AZMM01000179
[AZMM] human gut metagenome; premature infant gut
95
6
-
Ser
TGA
[ENA]
¢þ
>WENV170016574
AZMM01001947
[AZMM] human gut metagenome; premature infant gut
96
171
+
Asp
GTC
[ENA]
¢þ
>WENV170016569
AZMM01001235
[AZMM] human gut metagenome; premature infant gut
97
22
-
Glu
TTC
[ENA]
¢þ
>WENV170016579
AZMM01001997
[AZMM] human gut metagenome; premature infant gut
98
22
-
Met
CAT
[ENA]
¢þ
>WENV170016540
AZMM01000096
[AZMM] human gut metagenome; premature infant gut
102
27
-
Ala
TGC
[ENA]
¢þ
>WENV170016593
AZMM01005334
[AZMM] human gut metagenome; premature infant gut
103
30
-
Gly
TCC
[ENA]
¢þ
>WENV170016557
AZMM01000607
[AZMM] human gut metagenome; premature infant gut
103
174
+
Cys
GCA
[ENA]
¢þ
>WENV170016583
AZMM01002521
[AZMM] human gut metagenome; premature infant gut
109
185
+
Arg
TCT
[ENA]
¢þ
>WENV170016586
AZMM01003363
[AZMM] human gut metagenome; premature infant gut
113
186
+
Gly
TCC
[ENA]
¢þ
>WENV170016538
AZMM01000073
[AZMM] human gut metagenome; premature infant gut
117
191
+
Val
TAC
[ENA]
¢þ
>WENV170016546
AZMM01000229
[AZMM] human gut metagenome; premature infant gut
119
203
+
Tyr
GTA
[ENA]
¢þ
>WENV170016608
AZMM01012627
[AZMM] human gut metagenome; premature infant gut
126
202
+
Met
CAT
[ENA]
¢þ
>WENV170016600
AZMM01008299
[AZMM] human gut metagenome; premature infant gut
127
203
+
Pro
CGG
[ENA]
¢þ
>WENV170016551
AZMM01000275
[AZMM] human gut metagenome; premature infant gut
131
206
+
Val
TAC
[ENA]
¢þ
>WENV170016571
AZMM01001696
[AZMM] human gut metagenome; premature infant gut
132
207
+
Val
TAC
[ENA]
¢þ
>WENV170016636
AZMM01018827
[AZMM] human gut metagenome; premature infant gut
139
213
+
Asn
GTT
[ENA]
¢þ
>WENV170016606
AZMM01011696
[AZMM] human gut metagenome; premature infant gut
147
220
+
Trp
CCA
[ENA]
¢þ
>WENV170016561
AZMM01000930
[AZMM] human gut metagenome; premature infant gut
148
224
+
Pro
TGG
[ENA]
¢þ
>WENV170016595
AZMM01005888
[AZMM] human gut metagenome; premature infant gut
151
76
-
Asn
GTT
[ENA]
¢þ
>WENV170016604
AZMM01011281
[AZMM] human gut metagenome; premature infant gut
152
63
-
Ser
GGA
[ENA]
¢þ
>WENV170016580
AZMM01002094
[AZMM] human gut metagenome; premature infant gut
152
227
+
Thr
TGT
[ENA]
¢þ
>WENV170016609
AZMM01012872
[AZMM] human gut metagenome; premature infant gut
153
77
-
Arg
ACG
[ENA]
¢þ
>WENV170016556
AZMM01000459
[AZMM] human gut metagenome; premature infant gut
156
231
+
Lys
TTT
[ENA]
¢þ
>WENV170016564
AZMM01000983
[AZMM] human gut metagenome; premature infant gut
161
86
-
Pro
TGG
[ENA]
¢þ
>WENV170016567
AZMM01001025
[AZMM] human gut metagenome; premature infant gut
165
253
+
Leu
TAA
[ENA]
¢þ
>WENV170016588
AZMM01003512
[AZMM] human gut metagenome; premature infant gut
168
243
+
Phe
GAA
[ENA]
¢þ
>WENV170016646
AZMM01018927
[AZMM] human gut metagenome; premature infant gut
174
84
-
Ser
TGA
[ENA]
¢þ
>WENV170016541
AZMM01000155
[AZMM] human gut metagenome; premature infant gut
176
101
-
Phe
GAA
[ENA]
¢þ
>WENV170016599
AZMM01007982
[AZMM] human gut metagenome; premature infant gut
176
259
+
Leu
CAA
[ENA]
¢þ
>WENV170016544
AZMM01000179
[AZMM] human gut metagenome; premature infant gut
179
106
-
Glu
TTC
[ENA]
¢þ
>WENV170016572
AZMM01001908
[AZMM] human gut metagenome; premature infant gut
179
254
+
Thr
TGT
[ENA]
¢þ
>WENV170016547
AZMM01000261
[AZMM] human gut metagenome; premature infant gut
184
109
-
Ala
TGC
[ENA]
¢þ
>WENV170016549
AZMM01000272
[AZMM] human gut metagenome; premature infant gut
185
99
-
Leu
CAG
[ENA]
¢þ
>WENV170016605
AZMM01011638
[AZMM] human gut metagenome; premature infant gut
204
280
+
Arg
CCT
[ENA]
¢þ
>WENV170016584
AZMM01002521
[AZMM] human gut metagenome; premature infant gut
206
279
+
Gly
TCC
[ENA]
¢þ
>WENV170016590
AZMM01003778
[AZMM] human gut metagenome; premature infant gut
206
290
+
Tyr
GTA
[ENA]
¢þ
>WENV170016592
AZMM01005334
[AZMM] human gut metagenome; premature infant gut
208
134
-
Gly
GCC
[ENA]
¢þ
>WENV170016597
AZMM01007008
[AZMM] human gut metagenome; premature infant gut
210
285
+
Glu
CTC
[ENA]
¢þ
>WENV170016539
AZMM01000088
[AZMM] human gut metagenome; premature infant gut
215
140
-
Thr
GGT
[ENA]
¢þ
>WENV170016575
AZMM01001947
[AZMM] human gut metagenome; premature infant gut
217
289
+
Phe
GAA
[ENA]
¢þ
>WENV170016603
AZMM01010153
[AZMM] human gut metagenome; premature infant gut
226
312
+
Leu
GAG
[ENA]
¢þ
>WENV170016537
AZMM01000036
[AZMM] human gut metagenome; premature infant gut
235
160
-
Glu
TTC
[ENA]
¢þ
>WENV170016562
AZMM01000930
[AZMM] human gut metagenome; premature infant gut
235
308
+
Gly
TCC
[ENA]
¢þ
>WENV170016563
AZMM01000983
[AZMM] human gut metagenome; premature infant gut
245
169
-
Arg
TCT
[ENA]
¢þ
>WENV170016552
AZMM01000275
[AZMM] human gut metagenome; premature infant gut
253
328
+
Val
TAC
[ENA]
¢þ
>WENV170016589
AZMM01003512
[AZMM] human gut metagenome; premature infant gut
256
341
+
Leu
GAG
[ENA]
¢þ
>WENV170016543
AZMM01000179
[AZMM] human gut metagenome; premature infant gut
264
189
-
Ile
GAT
[ENA]
¢þ
>WENV170016558
AZMM01000632
[AZMM] human gut metagenome; premature infant gut
267
191
-
Asp
GTC
[ENA]
¢þ
>WENV170016576
AZMM01001947
[AZMM] human gut metagenome; premature infant gut
294
376
+
Tyr
GTA
[ENA]
¢þ
>WENV170016548
AZMM01000272
[AZMM] human gut metagenome; premature infant gut
300
214
-
Leu
CAG
[ENA]
¢þ
>WENV170016612
AZMM01015383
[AZMM] human gut metagenome; premature infant gut
350
277
-
Gly
CCC
[ENA]
¢þ
>WENV170016577
AZMM01001947
[AZMM] human gut metagenome; premature infant gut
380
453
+
Trp
CCA
[ENA]
¢þ
>WENV170016635
AZMM01018826
[AZMM] human gut metagenome; premature infant gut
433
359
-
Asn
GTT
[ENA]
¢þ
>WENV170016624
AZMM01018648
[AZMM] human gut metagenome; premature infant gut
434
505
+
Arg
CCG
[ENA]
¢þ
>WENV170016578
AZMM01001947
[AZMM] human gut metagenome; premature infant gut
490
563
+
His
GTG
[ENA]
¢þ
>WENV170016617
AZMM01018433
[AZMM] human gut metagenome; premature infant gut
699
609
-
Ser
GCT
[ENA]
¢þ
>WENV170016614
AZMM01018329
[AZMM] human gut metagenome; premature infant gut
716
789
+
Arg
CCG
[ENA]
¢þ
>WENV170016623
AZMM01018623
[AZMM] human gut metagenome; premature infant gut
746
673
-
Asn
GTT
[ENA]
¢þ
>WENV170016616
AZMM01018433
[AZMM] human gut metagenome; premature infant gut
899
809
-
Ser
GCT
[ENA]
¢þ
>WENV170016615
AZMM01018433
[AZMM] human gut metagenome; premature infant gut
976
902
-
Asn
GTT
[ENA]
¢þ
>WENV170016625
AZMM01018684
[AZMM] human gut metagenome; premature infant gut
2138
2046
-
Ser
TGA
[ENA]
¢þ
>WENV170016598
AZMM01007458
[AZMM] human gut metagenome; premature infant gut
2947
2874
-
Ile
GAT
[ENA]
¢þ
>WENV170016619
AZMM01018489
[AZMM] human gut metagenome; premature infant gut
3127
3052
-
Ala
TGC
[ENA]
¢þ
>WENV170016620
AZMM01018596
[AZMM] human gut metagenome; premature infant gut
6637
6710
+
Arg
TCT
[ENA]
¢þ
>WENV170016621
AZMM01018596
[AZMM] human gut metagenome; premature infant gut
9137
9208
+
Glu
TTC
[ENA]
¢þ
>WENV170016622
AZMM01018596
[AZMM] human gut metagenome; premature infant gut
9214
9287
+
Asn
GTT
[ENA]
¢þ
>WENV170016618
AZMM01018487
[AZMM] human gut metagenome; premature infant gut
10650
10726
+
Pro
CGG
[ENA]
¢þ
>WENV170016626
AZMM01018731
[AZMM] human gut metagenome; premature infant gut
13212
13288
+
Arg
CCG
[ENA]
¢þ
>WENV170016627
AZMM01018731
[AZMM] human gut metagenome; premature infant gut
13347
13422
+
His
GTG
[ENA]
¢þ
>WENV170016628
AZMM01018731
[AZMM] human gut metagenome; premature infant gut
13443
13529
+
Leu
CAG
[ENA]
¢þ
>WENV170016629
AZMM01018731
[AZMM] human gut metagenome; premature infant gut
13572
13648
+
Pro
TGG
[ENA]
¢þ
>WENV170016634
AZMM01018826
[AZMM] human gut metagenome; premature infant gut
14657
14569
-
Leu
TAA
[ENA]
¢þ
>WENV170016630
AZMM01018825
[AZMM] human gut metagenome; premature infant gut
55248
55323
+
Pro
TGG
[ENA]
¢þ
>WENV170016633
AZMM01018825
[AZMM] human gut metagenome; premature infant gut
58922
58847
-
Phe
GAA
[ENA]
¢þ
>WENV170016637
AZMM01018827
[AZMM] human gut metagenome; premature infant gut
63177
63260
+
Tyr
GTA
[ENA]
¢þ
>WENV170016638
AZMM01018827
[AZMM] human gut metagenome; premature infant gut
63269
63344
+
Val
TAC
[ENA]
¢þ
>WENV170016639
AZMM01018827
[AZMM] human gut metagenome; premature infant gut
63362
63436
+
Thr
TGT
[ENA]
¢þ
>WENV170016640
AZMM01018827
[AZMM] human gut metagenome; premature infant gut
63446
63529
+
Tyr
GTA
[ENA]
¢þ
>WENV170016641
AZMM01018827
[AZMM] human gut metagenome; premature infant gut
63538
63613
+
Val
TAC
[ENA]
¢þ
>WENV170016642
AZMM01018827
[AZMM] human gut metagenome; premature infant gut
63632
63706
+
Thr
TGT
[ENA]
¢þ
>WENV170016643
AZMM01018827
[AZMM] human gut metagenome; premature infant gut
63714
63797
+
Tyr
GTA
[ENA]
¢þ
>WENV170016632
AZMM01018825
[AZMM] human gut metagenome; premature infant gut
76988
76913
-
Ala
TGC
[ENA]
¢þ
>WENV170016631
AZMM01018825
[AZMM] human gut metagenome; premature infant gut
77069
76993
-
Met
CAT
[ENA]
¢þ
>WENV170016644
AZMM01018827
[AZMM] human gut metagenome; premature infant gut
87868
87942
+
Trp
CCA
[ENA]
¢þ
>WENV170016645
AZMM01018827
[AZMM] human gut metagenome; premature infant gut
93510
93584
+
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK