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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[CZQC] hydrothermal vent metagenome; ocean water
HIT:
46 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170564901
CZQC01000016
[CZQC] hydrothermal vent metagenome; ocean water
886
811
-
Asn
GTT
[ENA]
¢þ
>WENV170564925
CZQC01000062
[CZQC] hydrothermal vent metagenome; ocean water
1150
1075
-
Arg
CCT
[ENA]
¢þ
>WENV170564916
CZQC01000047
[CZQC] hydrothermal vent metagenome; ocean water
6079
6155
+
Val
GAC
[ENA]
¢þ
>WENV170564902
CZQC01000023
[CZQC] hydrothermal vent metagenome; ocean water
8580
8655
+
Phe
GAA
[ENA]
¢þ
>WENV170564905
CZQC01000029
[CZQC] hydrothermal vent metagenome; ocean water
9201
9116
-
Leu
GAG
[ENA]
¢þ
>WENV170564934
CZQC01000068
[CZQC] hydrothermal vent metagenome; ocean water
11590
11665
+
Glu
TTC
[ENA]
¢þ
>WENV170564935
CZQC01000068
[CZQC] hydrothermal vent metagenome; ocean water
11679
11754
+
Gly
GCC
[ENA]
¢þ
>WENV170564936
CZQC01000068
[CZQC] hydrothermal vent metagenome; ocean water
11869
11944
+
Glu
TTC
[ENA]
¢þ
>WENV170564937
CZQC01000068
[CZQC] hydrothermal vent metagenome; ocean water
11992
12067
+
Gly
GCC
[ENA]
¢þ
>WENV170564893
CZQC01000001
[CZQC] hydrothermal vent metagenome; ocean water
13061
12985
-
Met
CAT
[ENA]
¢þ
>WENV170564894
CZQC01000003
[CZQC] hydrothermal vent metagenome; ocean water
16637
16711
+
Gln
TTG
[ENA]
¢þ
>WENV170564938
CZQC01000068
[CZQC] hydrothermal vent metagenome; ocean water
17491
17580
+
Ser
GGA
[ENA]
¢þ
>WENV170564899
CZQC01000006
[CZQC] hydrothermal vent metagenome; ocean water
22612
22687
+
Thr
TGT
[ENA]
¢þ
>WENV170564903
CZQC01000024
[CZQC] hydrothermal vent metagenome; ocean water
25617
25703
+
Leu
CAA
[ENA]
¢þ
>WENV170564904
CZQC01000024
[CZQC] hydrothermal vent metagenome; ocean water
25762
25847
+
Leu
CAG
[ENA]
¢þ
>WENV170564920
CZQC01000048
[CZQC] hydrothermal vent metagenome; ocean water
26444
26358
-
Leu
TAA
[ENA]
¢þ
>WENV170564919
CZQC01000048
[CZQC] hydrothermal vent metagenome; ocean water
26600
26527
-
Cys
GCA
[ENA]
¢þ
>WENV170564918
CZQC01000048
[CZQC] hydrothermal vent metagenome; ocean water
26723
26648
-
Gly
GCC
[ENA]
¢þ
>WENV170564926
CZQC01000066
[CZQC] hydrothermal vent metagenome; ocean water
27024
27099
+
Asn
GTT
[ENA]
¢þ
>WENV170564927
CZQC01000066
[CZQC] hydrothermal vent metagenome; ocean water
27114
27190
+
Pro
TGG
[ENA]
¢þ
>WENV170564906
CZQC01000036
[CZQC] hydrothermal vent metagenome; ocean water
30407
30483
+
Met
CAT
[ENA]
¢þ
>WENV170564907
CZQC01000036
[CZQC] hydrothermal vent metagenome; ocean water
30592
30668
+
Met
CAT
[ENA]
¢þ
>WENV170564917
CZQC01000048
[CZQC] hydrothermal vent metagenome; ocean water
34056
33966
-
Ser
TGA
[ENA]
¢þ
>WENV170564900
CZQC01000015
[CZQC] hydrothermal vent metagenome; ocean water
39783
39859
+
Pro
GGG
[ENA]
¢þ
>WENV170564929
CZQC01000066
[CZQC] hydrothermal vent metagenome; ocean water
40201
40126
-
Lys
TTT
[ENA]
¢þ
>WENV170564928
CZQC01000066
[CZQC] hydrothermal vent metagenome; ocean water
40372
40297
-
Lys
TTT
[ENA]
¢þ
>WENV170564915
CZQC01000038
[CZQC] hydrothermal vent metagenome; ocean water
43318
43243
-
Glu
TTC
[ENA]
¢þ
>WENV170564914
CZQC01000038
[CZQC] hydrothermal vent metagenome; ocean water
43417
43342
-
Ala
GGC
[ENA]
¢þ
>WENV170564898
CZQC01000004
[CZQC] hydrothermal vent metagenome; ocean water
66190
66114
-
Asp
GTC
[ENA]
¢þ
>WENV170564897
CZQC01000004
[CZQC] hydrothermal vent metagenome; ocean water
72828
72753
-
His
GTG
[ENA]
¢þ
>WENV170564896
CZQC01000004
[CZQC] hydrothermal vent metagenome; ocean water
72933
72857
-
Arg
TCT
[ENA]
¢þ
>WENV170564895
CZQC01000004
[CZQC] hydrothermal vent metagenome; ocean water
73036
72960
-
Pro
TGG
[ENA]
¢þ
>WENV170564924
CZQC01000061
[CZQC] hydrothermal vent metagenome; ocean water
81496
81412
-
Leu
TAG
[ENA]
¢þ
>WENV170564933
CZQC01000067
[CZQC] hydrothermal vent metagenome; ocean water
96729
96654
-
Trp
CCA
[ENA]
¢þ
>WENV170564932
CZQC01000067
[CZQC] hydrothermal vent metagenome; ocean water
98174
98099
-
Thr
GGT
[ENA]
¢þ
>WENV170564931
CZQC01000067
[CZQC] hydrothermal vent metagenome; ocean water
98255
98182
-
Gly
TCC
[ENA]
¢þ
>WENV170564930
CZQC01000067
[CZQC] hydrothermal vent metagenome; ocean water
98422
98339
-
Tyr
GTA
[ENA]
¢þ
>WENV170564921
CZQC01000050
[CZQC] hydrothermal vent metagenome; ocean water
105278
105368
+
Ser
GCT
[ENA]
¢þ
>WENV170564922
CZQC01000050
[CZQC] hydrothermal vent metagenome; ocean water
105448
105524
+
Arg
ACG
[ENA]
¢þ
>WENV170564923
CZQC01000050
[CZQC] hydrothermal vent metagenome; ocean water
105570
105646
+
Arg
ACG
[ENA]
¢þ
>WENV170564913
CZQC01000036
[CZQC] hydrothermal vent metagenome; ocean water
171214
171138
-
Asp
GTC
[ENA]
¢þ
>WENV170564912
CZQC01000036
[CZQC] hydrothermal vent metagenome; ocean water
171323
171248
-
Val
TAC
[ENA]
¢þ
>WENV170564911
CZQC01000036
[CZQC] hydrothermal vent metagenome; ocean water
171579
171503
-
Asp
GTC
[ENA]
¢þ
>WENV170564910
CZQC01000036
[CZQC] hydrothermal vent metagenome; ocean water
171689
171614
-
Val
TAC
[ENA]
¢þ
>WENV170564909
CZQC01000036
[CZQC] hydrothermal vent metagenome; ocean water
171788
171712
-
Asp
GTC
[ENA]
¢þ
>WENV170564908
CZQC01000036
[CZQC] hydrothermal vent metagenome; ocean water
171893
171818
-
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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