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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA gene List
[FLRR] metagenome; saliva
HIT:
149 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180004230
FLRR01025288
[FLRR] metagenome; saliva
1
91
+
Ser
TGA
[ENA]
¢þ
>WENV180004212
FLRR01013952
[FLRR] metagenome; saliva
2
86
+
Leu
CAA
[ENA]
¢þ
>WENV180004291
FLRR01069907
[FLRR] metagenome; saliva
21
92
+
Gly
TCC
[ENA]
¢þ
>WENV180004215
FLRR01015361
[FLRR] metagenome; saliva
21
95
+
Ile
GAT
[ENA]
¢þ
>WENV180004296
FLRR01075772
[FLRR] metagenome; saliva
22
96
+
Gln
TTG
[ENA]
¢þ
>WENV180004257
FLRR01046262
[FLRR] metagenome; saliva
24
99
+
Arg
TCT
[ENA]
¢þ
>WENV180004319
FLRR01095512
[FLRR] metagenome; saliva
24
112
+
Ser
TGA
[ENA]
¢þ
>WENV180004292
FLRR01070208
[FLRR] metagenome; saliva
25
99
+
Pro
TGG
[ENA]
¢þ
>WENV180004304
FLRR01084773
[FLRR] metagenome; saliva
28
104
+
Met
CAT
[ENA]
¢þ
>WENV180004236
FLRR01029210
[FLRR] metagenome; saliva
30
105
+
Thr
GGT
[ENA]
¢þ
>WENV180004281
FLRR01065273
[FLRR] metagenome; saliva
32
108
+
Ile
GAT
[ENA]
¢þ
>WENV180004267
FLRR01048706
[FLRR] metagenome; saliva
36
108
+
Gln
CTG
[ENA]
¢þ
>WENV180004305
FLRR01085842
[FLRR] metagenome; saliva
36
112
+
Arg
TCT
[ENA]
¢þ
>WENV180004255
FLRR01045475
[FLRR] metagenome; saliva
37
111
+
Sup
CTA
[ENA]
¢þ
>WENV180004274
FLRR01055818
[FLRR] metagenome; saliva
42
116
+
Thr
TGT
[ENA]
¢þ
>WENV180004243
FLRR01036855
[FLRR] metagenome; saliva
43
118
+
Ala
GGC
[ENA]
¢þ
>WENV180004278
FLRR01059486
[FLRR] metagenome; saliva
43
118
+
Thr
CGT
[ENA]
¢þ
>WENV180004271
FLRR01051563
[FLRR] metagenome; saliva
46
118
+
Thr
GGT
[ENA]
¢þ
>WENV180004322
FLRR01098189
[FLRR] metagenome; saliva
46
119
+
Trp
CCA
[ENA]
¢þ
>WENV180004273
FLRR01054372
[FLRR] metagenome; saliva
47
121
+
Val
CAC
[ENA]
¢þ
>WENV180004327
FLRR01100544
[FLRR] metagenome; saliva
50
123
+
Trp
CCA
[ENA]
¢þ
>WENV180004299
FLRR01080594
[FLRR] metagenome; saliva
50
124
+
Asn
GTT
[ENA]
¢þ
>WENV180004214
FLRR01014787
[FLRR] metagenome; saliva
52
139
+
Leu
GAG
[ENA]
¢þ
>WENV180004310
FLRR01087377
[FLRR] metagenome; saliva
58
130
+
Gln
CTG
[ENA]
¢þ
>WENV180004275
FLRR01056926
[FLRR] metagenome; saliva
59
146
+
Ser
CGA
[ENA]
¢þ
>WENV180004259
FLRR01046776
[FLRR] metagenome; saliva
59
151
+
Ser
GCT
[ENA]
¢þ
>WENV180004192
FLRR01003923
[FLRR] metagenome; saliva
61
136
+
Gly
GCC
[ENA]
¢þ
>WENV180004245
FLRR01037669
[FLRR] metagenome; saliva
64
136
+
fMet
CAT
[ENA]
¢þ
>WENV180004219
FLRR01016106
[FLRR] metagenome; saliva
67
138
+
Cys
GCA
[ENA]
¢þ
>WENV180004277
FLRR01058906
[FLRR] metagenome; saliva
67
139
+
Thr
CGT
[ENA]
¢þ
>WENV180004225
FLRR01019545
[FLRR] metagenome; saliva
67
142
+
Ala
TGC
[ENA]
¢þ
>WENV180004193
FLRR01004150
[FLRR] metagenome; saliva
67
142
+
Trp
CCA
[ENA]
¢þ
>WENV180004233
FLRR01028615
[FLRR] metagenome; saliva
68
160
+
Ser
GCT
[ENA]
¢þ
>WENV180004239
FLRR01034107
[FLRR] metagenome; saliva
69
151
+
Tyr
GTA
[ENA]
¢þ
>WENV180004231
FLRR01027416
[FLRR] metagenome; saliva
72
2
-
Cys
GCA
[ENA]
¢þ
>WENV180004328
FLRR01101395
[FLRR] metagenome; saliva
74
1
-
Gly
GCC
[ENA]
¢þ
>WENV180004186
FLRR01002291
[FLRR] metagenome; saliva
75
1
-
Ile
GAT
[ENA]
¢þ
>WENV180004244
FLRR01037631
[FLRR] metagenome; saliva
75
148
+
Gly
TCC
[ENA]
¢þ
>WENV180004272
FLRR01053521
[FLRR] metagenome; saliva
76
147
+
Gln
TTG
[ENA]
¢þ
>WENV180004229
FLRR01022981
[FLRR] metagenome; saliva
77
1
-
Pro
TGG
[ENA]
¢þ
>WENV180004252
FLRR01041897
[FLRR] metagenome; saliva
78
4
-
Asn
GTT
[ENA]
¢þ
>WENV180004295
FLRR01073001
[FLRR] metagenome; saliva
79
3
-
Pro
GGG
[ENA]
¢þ
>WENV180004238
FLRR01033324
[FLRR] metagenome; saliva
79
4
-
Asn
GTT
[ENA]
¢þ
>WENV180004290
FLRR01068660
[FLRR] metagenome; saliva
80
4
-
Asp
GTC
[ENA]
¢þ
>WENV180004234
FLRR01028692
[FLRR] metagenome; saliva
80
151
+
Arg
CCT
[ENA]
¢þ
>WENV180004258
FLRR01046373
[FLRR] metagenome; saliva
85
11
-
Arg
CCT
[ENA]
¢þ
>WENV180004235
FLRR01028801
[FLRR] metagenome; saliva
86
14
-
Lys
TTT
[ENA]
¢þ
>WENV180004320
FLRR01096384
[FLRR] metagenome; saliva
87
162
+
Pro
CGG
[ENA]
¢þ
>WENV180004253
FLRR01043143
[FLRR] metagenome; saliva
88
160
+
Gln
CTG
[ENA]
¢þ
>WENV180004303
FLRR01084417
[FLRR] metagenome; saliva
93
1
-
Ser
GCT
[ENA]
¢þ
>WENV180004221
FLRR01016641
[FLRR] metagenome; saliva
98
24
-
His
GTG
[ENA]
¢þ
>WENV180004297
FLRR01076665
[FLRR] metagenome; saliva
99
25
-
Gln
TTG
[ENA]
¢þ
>WENV180004325
FLRR01099603
[FLRR] metagenome; saliva
101
26
-
His
GTG
[ENA]
¢þ
>WENV180004223
FLRR01017906
[FLRR] metagenome; saliva
105
178
+
Thr
GGT
[ENA]
¢þ
>WENV180004316
FLRR01091895
[FLRR] metagenome; saliva
108
37
-
Gln
TTG
[ENA]
¢þ
>WENV180004324
FLRR01099093
[FLRR] metagenome; saliva
109
33
-
Arg
ACG
[ENA]
¢þ
>WENV180004241
FLRR01035578
[FLRR] metagenome; saliva
109
34
-
Phe
GAA
[ENA]
¢þ
>WENV180004237
FLRR01029210
[FLRR] metagenome; saliva
111
186
+
Met
CAT
[ENA]
¢þ
>WENV180004256
FLRR01045614
[FLRR] metagenome; saliva
112
30
-
Leu
TAG
[ENA]
¢þ
>WENV180004329
FLRR01104144
[FLRR] metagenome; saliva
113
38
-
Glu
CTC
[ENA]
¢þ
>WENV180004287
FLRR01067425
[FLRR] metagenome; saliva
119
44
-
Lys
TTT
[ENA]
¢þ
>WENV180004302
FLRR01084296
[FLRR] metagenome; saliva
121
48
-
Gly
CCC
[ENA]
¢þ
>WENV180004315
FLRR01089392
[FLRR] metagenome; saliva
122
48
-
Val
CAC
[ENA]
¢þ
>WENV180004242
FLRR01035740
[FLRR] metagenome; saliva
122
48
-
Arg
CCG
[ENA]
¢þ
>WENV180004301
FLRR01083656
[FLRR] metagenome; saliva
123
47
-
Lys
CTT
[ENA]
¢þ
>WENV180004300
FLRR01081349
[FLRR] metagenome; saliva
124
53
-
Gly
TCC
[ENA]
¢þ
>WENV180004321
FLRR01097655
[FLRR] metagenome; saliva
125
51
-
Glu
TTC
[ENA]
¢þ
>WENV180004279
FLRR01060709
[FLRR] metagenome; saliva
126
51
-
Ala
GGC
[ENA]
¢þ
>WENV180004270
FLRR01050074
[FLRR] metagenome; saliva
126
52
-
His
GTG
[ENA]
¢þ
>WENV180004323
FLRR01098521
[FLRR] metagenome; saliva
126
56
-
Cys
GCA
[ENA]
¢þ
>WENV180004268
FLRR01049632
[FLRR] metagenome; saliva
126
201
+
Val
TAC
[ENA]
¢þ
>WENV180004216
FLRR01015774
[FLRR] metagenome; saliva
126
202
+
Ile
GAT
[ENA]
¢þ
>WENV180004317
FLRR01094858
[FLRR] metagenome; saliva
127
52
-
Arg
CCG
[ENA]
¢þ
>WENV180004284
FLRR01067205
[FLRR] metagenome; saliva
132
56
-
Val
CAC
[ENA]
¢þ
>WENV180004247
FLRR01038776
[FLRR] metagenome; saliva
133
60
-
Ala
TGC
[ENA]
¢þ
>WENV180004298
FLRR01076845
[FLRR] metagenome; saliva
135
60
-
Val
TAC
[ENA]
¢þ
>WENV180004251
FLRR01041691
[FLRR] metagenome; saliva
135
64
-
Cys
GCA
[ENA]
¢þ
>WENV180004232
FLRR01028578
[FLRR] metagenome; saliva
136
60
-
Arg
ACG
[ENA]
¢þ
>WENV180004246
FLRR01037846
[FLRR] metagenome; saliva
150
79
-
Cys
GCA
[ENA]
¢þ
>WENV180004269
FLRR01049900
[FLRR] metagenome; saliva
153
79
-
Gln
CTG
[ENA]
¢þ
>WENV180004312
FLRR01087602
[FLRR] metagenome; saliva
154
68
-
Leu
TAA
[ENA]
¢þ
>WENV180004248
FLRR01039266
[FLRR] metagenome; saliva
161
234
+
Arg
CCT
[ENA]
¢þ
>WENV180004203
FLRR01007879
[FLRR] metagenome; saliva
171
98
-
Lys
TTT
[ENA]
¢þ
>WENV180004213
FLRR01014416
[FLRR] metagenome; saliva
187
271
+
Leu
TAG
[ENA]
¢þ
>WENV180004266
FLRR01048213
[FLRR] metagenome; saliva
196
110
-
Leu
CAG
[ENA]
¢þ
>WENV180004286
FLRR01067425
[FLRR] metagenome; saliva
198
124
-
Gln
TTG
[ENA]
¢þ
>WENV180004240
FLRR01035578
[FLRR] metagenome; saliva
205
130
-
Asp
GTC
[ENA]
¢þ
>WENV180004318
FLRR01095197
[FLRR] metagenome; saliva
236
310
+
Met
CAT
[ENA]
¢þ
>WENV180004294
FLRR01072696
[FLRR] metagenome; saliva
239
164
-
Asn
GTT
[ENA]
¢þ
>WENV180004201
FLRR01005549
[FLRR] metagenome; saliva
239
313
+
Val
TAC
[ENA]
¢þ
>WENV180004195
FLRR01004313
[FLRR] metagenome; saliva
244
319
+
Trp
CCA
[ENA]
¢þ
>WENV180004207
FLRR01010090
[FLRR] metagenome; saliva
251
176
-
Arg
TCT
[ENA]
¢þ
>WENV180004205
FLRR01009485
[FLRR] metagenome; saliva
255
180
-
Asn
GTT
[ENA]
¢þ
>WENV180004264
FLRR01047858
[FLRR] metagenome; saliva
255
341
+
Leu
CAG
[ENA]
¢þ
>WENV180004311
FLRR01087602
[FLRR] metagenome; saliva
256
183
-
Cys
GCA
[ENA]
¢þ
>WENV180004249
FLRR01039689
[FLRR] metagenome; saliva
256
332
+
Arg
ACG
[ENA]
¢þ
>WENV180004183
FLRR01000186
[FLRR] metagenome; saliva
261
335
+
Ala
TGC
[ENA]
¢þ
>WENV180004313
FLRR01089266
[FLRR] metagenome; saliva
269
345
+
Met
CAT
[ENA]
¢þ
>WENV180004309
FLRR01087324
[FLRR] metagenome; saliva
276
202
-
Thr
GGT
[ENA]
¢þ
>WENV180004204
FLRR01008842
[FLRR] metagenome; saliva
284
360
+
fMet
CAT
[ENA]
¢þ
>WENV180004250
FLRR01041285
[FLRR] metagenome; saliva
285
199
-
Leu
CAG
[ENA]
¢þ
>WENV180004222
FLRR01016828
[FLRR] metagenome; saliva
291
379
+
Ser
TGA
[ENA]
¢þ
>WENV180004211
FLRR01012777
[FLRR] metagenome; saliva
296
225
-
Gln
TTG
[ENA]
¢þ
>WENV180004285
FLRR01067425
[FLRR] metagenome; saliva
298
223
-
His
GTG
[ENA]
¢þ
>WENV180004326
FLRR01100490
[FLRR] metagenome; saliva
305
380
+
Arg
CCG
[ENA]
¢þ
>WENV180004293
FLRR01072696
[FLRR] metagenome; saliva
317
242
-
Phe
GAA
[ENA]
¢þ
>WENV180004265
FLRR01048213
[FLRR] metagenome; saliva
321
235
-
Leu
CAG
[ENA]
¢þ
>WENV180004218
FLRR01015877
[FLRR] metagenome; saliva
330
256
-
Asp
GTC
[ENA]
¢þ
>WENV180004202
FLRR01006817
[FLRR] metagenome; saliva
330
406
+
Pro
CGG
[ENA]
¢þ
>WENV180004198
FLRR01005311
[FLRR] metagenome; saliva
337
262
-
Thr
GGT
[ENA]
¢þ
>WENV180004260
FLRR01047469
[FLRR] metagenome; saliva
338
425
+
Ser
CGA
[ENA]
¢þ
>WENV180004228
FLRR01022961
[FLRR] metagenome; saliva
347
258
-
Leu
TAA
[ENA]
¢þ
>WENV180004314
FLRR01089266
[FLRR] metagenome; saliva
352
427
+
Ala
GGC
[ENA]
¢þ
>WENV180004306
FLRR01085842
[FLRR] metagenome; saliva
361
272
-
Ser
GGA
[ENA]
¢þ
>WENV180004308
FLRR01087324
[FLRR] metagenome; saliva
361
288
-
Gly
TCC
[ENA]
¢þ
>WENV180004194
FLRR01004312
[FLRR] metagenome; saliva
370
461
+
Arg
TCT
[ENA]
¢þ
>WENV180004224
FLRR01018914
[FLRR] metagenome; saliva
410
335
-
Arg
CCG
[ENA]
¢þ
>WENV180004197
FLRR01005311
[FLRR] metagenome; saliva
415
341
-
Gly
TCC
[ENA]
¢þ
>WENV180004220
FLRR01016513
[FLRR] metagenome; saliva
442
367
-
Glu
TTC
[ENA]
¢þ
>WENV180004217
FLRR01015877
[FLRR] metagenome; saliva
471
398
-
Glu
TTC
[ENA]
¢þ
>WENV180004307
FLRR01087324
[FLRR] metagenome; saliva
481
398
-
Tyr
GTA
[ENA]
¢þ
>WENV180004280
FLRR01063633
[FLRR] metagenome; saliva
497
412
-
Leu
GAG
[ENA]
¢þ
>WENV180004199
FLRR01005527
[FLRR] metagenome; saliva
511
587
+
Ile
GAT
[ENA]
¢þ
>WENV180004226
FLRR01020401
[FLRR] metagenome; saliva
516
591
+
Thr
TGT
[ENA]
¢þ
>WENV180004227
FLRR01022961
[FLRR] metagenome; saliva
533
460
-
Cys
GCA
[ENA]
¢þ
>WENV180004200
FLRR01005527
[FLRR] metagenome; saliva
593
668
+
Ala
TGC
[ENA]
¢þ
>WENV180004196
FLRR01005274
[FLRR] metagenome; saliva
620
693
+
Trp
CCA
[ENA]
¢þ
>WENV180004206
FLRR01010074
[FLRR] metagenome; saliva
648
723
+
Phe
GAA
[ENA]
¢þ
>WENV180004288
FLRR01067934
[FLRR] metagenome; saliva
692
768
+
Ile
GAT
[ENA]
¢þ
>WENV180004276
FLRR01057810
[FLRR] metagenome; saliva
734
659
-
Asn
GTT
[ENA]
¢þ
>WENV180004254
FLRR01045365
[FLRR] metagenome; saliva
810
885
+
Lys
TTT
[ENA]
¢þ
>WENV180004289
FLRR01067934
[FLRR] metagenome; saliva
822
897
+
Ala
TGC
[ENA]
¢þ
>WENV180004190
FLRR01003080
[FLRR] metagenome; saliva
863
937
+
Arg
CCT
[ENA]
¢þ
>WENV180004191
FLRR01003846
[FLRR] metagenome; saliva
919
994
+
Gln
TTG
[ENA]
¢þ
>WENV180004261
FLRR01047775
[FLRR] metagenome; saliva
944
1027
+
Tyr
GTA
[ENA]
¢þ
>WENV180004262
FLRR01047775
[FLRR] metagenome; saliva
1060
1133
+
Gly
TCC
[ENA]
¢þ
>WENV180004263
FLRR01047775
[FLRR] metagenome; saliva
1143
1217
+
Thr
GGT
[ENA]
¢þ
>WENV180004182
FLRR01000061
[FLRR] metagenome; saliva
1463
1377
-
Leu
CAG
[ENA]
¢þ
>WENV180004187
FLRR01002384
[FLRR] metagenome; saliva
1472
1549
+
Pro
TGG
[ENA]
¢þ
>WENV180004188
FLRR01002384
[FLRR] metagenome; saliva
1577
1653
+
Arg
TCT
[ENA]
¢þ
>WENV180004208
FLRR01010433
[FLRR] metagenome; saliva
1647
1721
+
Ile
GAT
[ENA]
¢þ
>WENV180004189
FLRR01002384
[FLRR] metagenome; saliva
1663
1738
+
His
GTG
[ENA]
¢þ
>WENV180004181
FLRR01000033
[FLRR] metagenome; saliva
1784
1859
+
Val
TAC
[ENA]
¢þ
>WENV180004209
FLRR01010433
[FLRR] metagenome; saliva
1865
1938
+
Ala
TGC
[ENA]
¢þ
>WENV180004282
FLRR01065660
[FLRR] metagenome; saliva
1931
2007
+
Ile
GAT
[ENA]
¢þ
>WENV180004283
FLRR01065660
[FLRR] metagenome; saliva
2013
2088
+
Ala
TGC
[ENA]
¢þ
>WENV180004210
FLRR01012529
[FLRR] metagenome; saliva
2928
2853
-
Trp
CCA
[ENA]
¢þ
>WENV180004184
FLRR01000186
[FLRR] metagenome; saliva
3839
3911
+
Val
TAC
[ENA]
¢þ
>WENV180004185
FLRR01000186
[FLRR] metagenome; saliva
3915
3987
+
Gly
TCC
[ENA]
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Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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