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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSTS] metagenome; soil
HIT:
23 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180015956
FSTS01000293
[FSTS] metagenome; soil
147
72
-
Asn
GTT
[ENA]
¢þ
>WENV180015961
FSTS01000362
[FSTS] metagenome; soil
278
189
-
Ser
GGA
[ENA]
¢þ
>WENV180015953
FSTS01000131
[FSTS] metagenome; soil
457
380
-
Pro
TGG
[ENA]
¢þ
>WENV180015957
FSTS01000311
[FSTS] metagenome; soil
587
663
+
Met
CAT
[ENA]
¢þ
>WENV180015968
FSTS01000494
[FSTS] metagenome; soil
753
828
+
Ala
TGC
[ENA]
¢þ
>WENV180015966
FSTS01000428
[FSTS] metagenome; soil
1017
932
-
Leu
CAA
[ENA]
¢þ
>WENV180015950
FSTS01000057
[FSTS] metagenome; soil
1369
1445
+
Gly
CCC
[ENA]
¢þ
>WENV180015960
FSTS01000357
[FSTS] metagenome; soil
1781
1870
+
Ser
CGA
[ENA]
¢þ
>WENV180015970
FSTS01000592
[FSTS] metagenome; soil
2354
2279
-
Thr
CGT
[ENA]
¢þ
>WENV180015948
FSTS01000018
[FSTS] metagenome; soil
2610
2535
-
Lys
TTT
[ENA]
¢þ
>WENV180015963
FSTS01000399
[FSTS] metagenome; soil
3562
3638
+
Arg
TCT
[ENA]
¢þ
>WENV180015964
FSTS01000399
[FSTS] metagenome; soil
3736
3652
-
Leu
TAG
[ENA]
¢þ
>WENV180015965
FSTS01000409
[FSTS] metagenome; soil
3794
3710
-
Leu
CAG
[ENA]
¢þ
>WENV180015962
FSTS01000369
[FSTS] metagenome; soil
3881
3957
+
Gly
GCC
[ENA]
¢þ
>WENV180015952
FSTS01000097
[FSTS] metagenome; soil
4070
3996
-
Val
CAC
[ENA]
¢þ
>WENV180015951
FSTS01000075
[FSTS] metagenome; soil
4305
4222
-
Leu
GAG
[ENA]
¢þ
>WENV180015969
FSTS01000587
[FSTS] metagenome; soil
4348
4274
-
Val
GAC
[ENA]
¢þ
>WENV180015967
FSTS01000486
[FSTS] metagenome; soil
4375
4451
+
Arg
TCG
[ENA]
¢þ
>WENV180015955
FSTS01000286
[FSTS] metagenome; soil
4486
4409
-
Pro
GGG
[ENA]
¢þ
>WENV180015958
FSTS01000317
[FSTS] metagenome; soil
4534
4459
-
Glu
TTC
[ENA]
¢þ
>WENV180015949
FSTS01000027
[FSTS] metagenome; soil
4643
4569
-
Gln
TTG
[ENA]
¢þ
>WENV180015959
FSTS01000342
[FSTS] metagenome; soil
5874
5963
+
Ser
GCT
[ENA]
¢þ
>WENV180015954
FSTS01000273
[FSTS] metagenome; soil
8224
8150
-
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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