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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSVR] metagenome; soil
HIT:
13 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180016645
FSVR01000029
[FSVR] metagenome; soil
71
-1
-
Arg
CCG
[ENA]
¢þ
>WENV180016646
FSVR01000056
[FSVR] metagenome; soil
490
417
-
Trp
CCA
[ENA]
¢þ
>WENV180016650
FSVR01000166
[FSVR] metagenome; soil
1733
1809
+
Pro
GGG
[ENA]
¢þ
>WENV180016644
FSVR01000021
[FSVR] metagenome; soil
1943
2017
+
Ala
GGC
[ENA]
¢þ
>WENV180016643
FSVR01000005
[FSVR] metagenome; soil
2285
2211
-
Pro
CGG
[ENA]
¢þ
>WENV180016652
FSVR01000220
[FSVR] metagenome; soil
2577
2650
+
Gln
TTG
[ENA]
¢þ
>WENV180016649
FSVR01000140
[FSVR] metagenome; soil
2654
2727
+
Ala
CGC
[ENA]
¢þ
>WENV180016653
FSVR01000230
[FSVR] metagenome; soil
3074
3159
+
Leu
GAG
[ENA]
¢þ
>WENV180016655
FSVR01000263
[FSVR] metagenome; soil
4184
4100
-
Leu
CAG
[ENA]
¢þ
>WENV180016647
FSVR01000075
[FSVR] metagenome; soil
4258
4342
+
Leu
CAG
[ENA]
¢þ
>WENV180016651
FSVR01000182
[FSVR] metagenome; soil
5625
5550
-
Leu
TAA
[ENA]
¢þ
>WENV180016654
FSVR01000237
[FSVR] metagenome; soil
5723
5638
-
Ser
TGA
[ENA]
¢þ
>WENV180016648
FSVR01000086
[FSVR] metagenome; soil
7992
8065
+
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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