This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FSWU] metagenome; soil
HIT:
41 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180017371
FSWU01000323
[FSWU] metagenome; soil
23
97
+
Arg
ACG
[ENA]
¢þ
>WENV180017366
FSWU01000180
[FSWU] metagenome; soil
82
8
-
Val
TAC
[ENA]
¢þ
>WENV180017359
FSWU01000114
[FSWU] metagenome; soil
158
232
+
Val
TAC
[ENA]
¢þ
>WENV180017377
FSWU01000399
[FSWU] metagenome; soil
173
100
-
Gly
CCC
[ENA]
¢þ
>WENV180017383
FSWU01000452
[FSWU] metagenome; soil
358
283
-
Val
CAC
[ENA]
¢þ
>WENV180017360
FSWU01000125
[FSWU] metagenome; soil
475
552
+
Pro
TGG
[ENA]
¢þ
>WENV180017380
FSWU01000452
[FSWU] metagenome; soil
535
607
+
Gly
GCC
[ENA]
¢þ
>WENV180017376
FSWU01000398
[FSWU] metagenome; soil
561
643
+
Leu
TAG
[ENA]
¢þ
>WENV180017348
FSWU01000008
[FSWU] metagenome; soil
595
684
+
Ser
CGA
[ENA]
¢þ
>WENV180017381
FSWU01000452
[FSWU] metagenome; soil
662
735
+
Cys
GCA
[ENA]
¢þ
>WENV180017382
FSWU01000452
[FSWU] metagenome; soil
760
833
+
Val
GAC
[ENA]
¢þ
>WENV180017362
FSWU01000153
[FSWU] metagenome; soil
1033
1105
+
Thr
GGT
[ENA]
¢þ
>WENV180017363
FSWU01000153
[FSWU] metagenome; soil
1137
1211
+
Met
CAT
[ENA]
¢þ
>WENV180017355
FSWU01000105
[FSWU] metagenome; soil
1203
1286
+
Leu
CAA
[ENA]
¢þ
>WENV180017369
FSWU01000257
[FSWU] metagenome; soil
1256
1182
-
Pro
GGG
[ENA]
¢þ
>WENV180017361
FSWU01000137
[FSWU] metagenome; soil
1274
1199
-
Ala
GGC
[ENA]
¢þ
>WENV180017386
FSWU01000458
[FSWU] metagenome; soil
1831
1755
-
fMet
CAT
[ENA]
¢þ
>WENV180017372
FSWU01000359
[FSWU] metagenome; soil
1925
1852
-
Trp
CCA
[ENA]
¢þ
>WENV180017370
FSWU01000262
[FSWU] metagenome; soil
2102
2026
-
fMet
CAT
[ENA]
¢þ
>WENV180017388
FSWU01000477
[FSWU] metagenome; soil
2973
2897
-
Ile2
CAT
[ENA]
¢þ
>WENV180017368
FSWU01000239
[FSWU] metagenome; soil
3089
3171
+
Tyr
GTA
[ENA]
¢þ
>WENV180017364
FSWU01000162
[FSWU] metagenome; soil
4294
4367
+
Trp
CCA
[ENA]
¢þ
>WENV180017354
FSWU01000062
[FSWU] metagenome; soil
5394
5310
-
Leu
GAG
[ENA]
¢þ
>WENV180017387
FSWU01000467
[FSWU] metagenome; soil
5746
5819
+
Glu
CTC
[ENA]
¢þ
>WENV180017373
FSWU01000370
[FSWU] metagenome; soil
5810
5736
-
Ala
CGC
[ENA]
¢þ
>WENV180017378
FSWU01000424
[FSWU] metagenome; soil
5995
6068
+
Arg
ACG
[ENA]
¢þ
>WENV180017375
FSWU01000390
[FSWU] metagenome; soil
7232
7158
-
Ile2
CAT
[ENA]
¢þ
>WENV180017352
FSWU01000035
[FSWU] metagenome; soil
7293
7218
-
His
GTG
[ENA]
¢þ
>WENV180017351
FSWU01000035
[FSWU] metagenome; soil
7476
7550
+
Arg
TCT
[ENA]
¢þ
>WENV180017356
FSWU01000108
[FSWU] metagenome; soil
10572
10646
+
Ile
GAT
[ENA]
¢þ
>WENV180017357
FSWU01000108
[FSWU] metagenome; soil
10663
10736
+
Ala
TGC
[ENA]
¢þ
>WENV180017350
FSWU01000020
[FSWU] metagenome; soil
11511
11437
-
Arg
CCG
[ENA]
¢þ
>WENV180017349
FSWU01000011
[FSWU] metagenome; soil
13883
13954
+
Gly
CCC
[ENA]
¢þ
>WENV180017374
FSWU01000390
[FSWU] metagenome; soil
14022
14097
+
Asn
GTT
[ENA]
¢þ
>WENV180017353
FSWU01000049
[FSWU] metagenome; soil
15086
15172
+
Ser
GGA
[ENA]
¢þ
>WENV180017379
FSWU01000431
[FSWU] metagenome; soil
17232
17315
+
Leu
CAA
[ENA]
¢þ
>WENV180017367
FSWU01000184
[FSWU] metagenome; soil
22465
22390
-
Lys
CTT
[ENA]
¢þ
>WENV180017358
FSWU01000108
[FSWU] metagenome; soil
23754
23837
+
Leu
CAG
[ENA]
¢þ
>WENV180017365
FSWU01000177
[FSWU] metagenome; soil
31581
31663
+
Tyr
GTA
[ENA]
¢þ
>WENV180017384
FSWU01000454
[FSWU] metagenome; soil
44368
44440
+
Gln
TTG
[ENA]
¢þ
>WENV180017385
FSWU01000454
[FSWU] metagenome; soil
64270
64344
+
Leu
TAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK