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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSWX] metagenome; soil
HIT:
8 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180017419
FSWX01000355
[FSWX] metagenome; soil
76
4
-
Ile2
CAT
[ENA]
¢þ
>WENV180017412
FSWX01000065
[FSWX] metagenome; soil
87
1
-
Leu
TAA
[ENA]
¢þ
>WENV180017413
FSWX01000149
[FSWX] metagenome; soil
350
423
+
Thr
TGT
[ENA]
¢þ
>WENV180017415
FSWX01000187
[FSWX] metagenome; soil
377
304
-
Gln
CTG
[ENA]
¢þ
>WENV180017418
FSWX01000326
[FSWX] metagenome; soil
1480
1552
+
Ile2
CAT
[ENA]
¢þ
>WENV180017416
FSWX01000227
[FSWX] metagenome; soil
2789
2716
-
Phe
GAA
[ENA]
¢þ
>WENV180017414
FSWX01000158
[FSWX] metagenome; soil
3365
3442
+
fMet
CAT
[ENA]
¢þ
>WENV180017417
FSWX01000237
[FSWX] metagenome; soil
4437
4365
-
Cys
GCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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