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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSYS] metagenome; soil
HIT:
86 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180018238
FSYS01002383
[FSYS] metagenome; soil
2
78
+
Arg
ACG
[ENA]
¢þ
>WENV180018232
FSYS01001970
[FSYS] metagenome; soil
3
97
+
SeC
TCA
[ENA]
¢þ
>WENV180018236
FSYS01002284
[FSYS] metagenome; soil
4
80
+
Glu
TTC
[ENA]
¢þ
>WENV180018184
FSYS01000345
[FSYS] metagenome; soil
4
80
+
Pro
TGG
[ENA]
¢þ
>WENV180018183
FSYS01000242
[FSYS] metagenome; soil
11
97
+
Leu
CAG
[ENA]
¢þ
>WENV180018228
FSYS01001878
[FSYS] metagenome; soil
15
106
+
Ser
CGA
[ENA]
¢þ
>WENV180018257
FSYS01002887
[FSYS] metagenome; soil
18
99
+
Leu
CAG
[ENA]
¢þ
>WENV180018193
FSYS01000987
[FSYS] metagenome; soil
45
121
+
Met
CAT
[ENA]
¢þ
>WENV180018245
FSYS01002537
[FSYS] metagenome; soil
57
131
+
Phe
GAA
[ENA]
¢þ
>WENV180018217
FSYS01001577
[FSYS] metagenome; soil
73
-1
-
Arg
ACG
[ENA]
¢þ
>WENV180018258
FSYS01002919
[FSYS] metagenome; soil
76
2
-
Val
CAC
[ENA]
¢þ
>WENV180018208
FSYS01001308
[FSYS] metagenome; soil
79
3
-
Pro
TGG
[ENA]
¢þ
>WENV180018210
FSYS01001346
[FSYS] metagenome; soil
87
11
-
Pro
CGG
[ENA]
¢þ
>WENV180018235
FSYS01002249
[FSYS] metagenome; soil
102
28
-
Glu
TTC
[ENA]
¢þ
>WENV180018226
FSYS01001743
[FSYS] metagenome; soil
112
38
-
Val
CAC
[ENA]
¢þ
>WENV180018237
FSYS01002301
[FSYS] metagenome; soil
137
49
-
Leu
TAA
[ENA]
¢þ
>WENV180018181
FSYS01000111
[FSYS] metagenome; soil
143
67
-
Arg
TCT
[ENA]
¢þ
>WENV180018230
FSYS01001945
[FSYS] metagenome; soil
444
518
+
Sup
TCA
[ENA]
¢þ
>WENV180018256
FSYS01002886
[FSYS] metagenome; soil
546
475
-
Gln
TTG
[ENA]
¢þ
>WENV180018239
FSYS01002432
[FSYS] metagenome; soil
549
621
+
Cys
GCA
[ENA]
¢þ
>WENV180018253
FSYS01002784
[FSYS] metagenome; soil
595
671
+
Glu
CTC
[ENA]
¢þ
>WENV180018196
FSYS01001031
[FSYS] metagenome; soil
635
711
+
Arg
TCT
[ENA]
¢þ
>WENV180018264
FSYS01003166
[FSYS] metagenome; soil
649
574
-
Cys
GCA
[ENA]
¢þ
>WENV180018255
FSYS01002886
[FSYS] metagenome; soil
659
733
+
Glu
CTC
[ENA]
¢þ
>WENV180018207
FSYS01001308
[FSYS] metagenome; soil
720
794
+
His
GTG
[ENA]
¢þ
>WENV180018223
FSYS01001667
[FSYS] metagenome; soil
787
862
+
Ile2
CAT
[ENA]
¢þ
>WENV180018199
FSYS01001059
[FSYS] metagenome; soil
793
718
-
Lys
TTT
[ENA]
¢þ
>WENV180018242
FSYS01002479
[FSYS] metagenome; soil
848
920
+
Ile2
CAT
[ENA]
¢þ
>WENV180018215
FSYS01001547
[FSYS] metagenome; soil
909
998
+
Ser
GCT
[ENA]
¢þ
>WENV180018216
FSYS01001564
[FSYS] metagenome; soil
1204
1129
-
Lys
TTT
[ENA]
¢þ
>WENV180018244
FSYS01002531
[FSYS] metagenome; soil
1320
1396
+
Arg
CCT
[ENA]
¢þ
>WENV180018229
FSYS01001899
[FSYS] metagenome; soil
1374
1461
+
Ser
TGA
[ENA]
¢þ
>WENV180018250
FSYS01002720
[FSYS] metagenome; soil
1411
1483
+
Val
TAC
[ENA]
¢þ
>WENV180018214
FSYS01001522
[FSYS] metagenome; soil
1497
1406
-
Ser
CGA
[ENA]
¢þ
>WENV180018206
FSYS01001277
[FSYS] metagenome; soil
1499
1573
+
Val
GAC
[ENA]
¢þ
>WENV180018254
FSYS01002800
[FSYS] metagenome; soil
1609
1695
+
Leu
CAG
[ENA]
¢þ
>WENV180018262
FSYS01003151
[FSYS] metagenome; soil
1688
1764
+
Met
CAT
[ENA]
¢þ
>WENV180018225
FSYS01001740
[FSYS] metagenome; soil
1770
1695
-
Thr
CGT
[ENA]
¢þ
>WENV180018189
FSYS01000847
[FSYS] metagenome; soil
1828
1752
-
Arg
CCG
[ENA]
¢þ
>WENV180018234
FSYS01002135
[FSYS] metagenome; soil
1904
1828
-
Ile2
CAT
[ENA]
¢þ
>WENV180018179
FSYS01000005
[FSYS] metagenome; soil
2113
2038
-
Ile2
CAT
[ENA]
¢þ
>WENV180018227
FSYS01001773
[FSYS] metagenome; soil
2278
2204
-
Arg
ACG
[ENA]
¢þ
>WENV180018194
FSYS01001024
[FSYS] metagenome; soil
2327
2400
+
Arg
CCT
[ENA]
¢þ
>WENV180018252
FSYS01002771
[FSYS] metagenome; soil
2452
2527
+
Cys
GCA
[ENA]
¢þ
>WENV180018182
FSYS01000208
[FSYS] metagenome; soil
2758
2685
-
Thr
TGT
[ENA]
¢þ
>WENV180018185
FSYS01000378
[FSYS] metagenome; soil
2924
2848
-
Val
TAC
[ENA]
¢þ
>WENV180018188
FSYS01000712
[FSYS] metagenome; soil
3244
3168
-
Arg
ACG
[ENA]
¢þ
>WENV180018180
FSYS01000016
[FSYS] metagenome; soil
3308
3383
+
Glu
CTC
[ENA]
¢þ
>WENV180018224
FSYS01001694
[FSYS] metagenome; soil
3346
3417
+
Phe
GAA
[ENA]
¢þ
>WENV180018231
FSYS01001965
[FSYS] metagenome; soil
3359
3283
-
Arg
ACG
[ENA]
¢þ
>WENV180018187
FSYS01000682
[FSYS] metagenome; soil
3395
3320
-
Arg
CCG
[ENA]
¢þ
>WENV180018203
FSYS01001182
[FSYS] metagenome; soil
3401
3476
+
Ala
GGC
[ENA]
¢þ
>WENV180018204
FSYS01001210
[FSYS] metagenome; soil
3412
3485
+
Glu
TTC
[ENA]
¢þ
>WENV180018248
FSYS01002709
[FSYS] metagenome; soil
3520
3444
-
Arg
ACG
[ENA]
¢þ
>WENV180018202
FSYS01001156
[FSYS] metagenome; soil
3698
3773
+
Thr
TGT
[ENA]
¢þ
>WENV180018246
FSYS01002558
[FSYS] metagenome; soil
3734
3808
+
Gly
CCC
[ENA]
¢þ
>WENV180018186
FSYS01000450
[FSYS] metagenome; soil
3810
3736
-
Asn
GTT
[ENA]
¢þ
>WENV180018191
FSYS01000952
[FSYS] metagenome; soil
3879
3954
+
Lys
CTT
[ENA]
¢þ
>WENV180018192
FSYS01000980
[FSYS] metagenome; soil
3938
4013
+
Ile2
CAT
[ENA]
¢þ
>WENV180018205
FSYS01001250
[FSYS] metagenome; soil
3944
3861
-
Leu
TAG
[ENA]
¢þ
>WENV180018233
FSYS01002007
[FSYS] metagenome; soil
3959
4033
+
Val
GAC
[ENA]
¢þ
>WENV180018251
FSYS01002742
[FSYS] metagenome; soil
5050
5124
+
Glu
TTC
[ENA]
¢þ
>WENV180018197
FSYS01001039
[FSYS] metagenome; soil
5269
5183
-
Leu
CAG
[ENA]
¢þ
>WENV180018261
FSYS01003101
[FSYS] metagenome; soil
5512
5440
-
Met
CAT
[ENA]
¢þ
>WENV180018201
FSYS01001128
[FSYS] metagenome; soil
5731
5649
-
Tyr
GTA
[ENA]
¢þ
>WENV180018259
FSYS01002996
[FSYS] metagenome; soil
5798
5887
+
Ser
TGA
[ENA]
¢þ
>WENV180018221
FSYS01001609
[FSYS] metagenome; soil
6319
6233
-
Leu
CAG
[ENA]
¢þ
>WENV180018260
FSYS01003003
[FSYS] metagenome; soil
6422
6349
-
Phe
GAA
[ENA]
¢þ
>WENV180018247
FSYS01002690
[FSYS] metagenome; soil
6459
6543
+
Leu
TAG
[ENA]
¢þ
>WENV180018200
FSYS01001127
[FSYS] metagenome; soil
6574
6648
+
Asn
GTT
[ENA]
¢þ
>WENV180018241
FSYS01002466
[FSYS] metagenome; soil
6668
6743
+
Arg
CCT
[ENA]
¢þ
>WENV180018195
FSYS01001028
[FSYS] metagenome; soil
6945
7019
+
Glu
TTC
[ENA]
¢þ
>WENV180018212
FSYS01001484
[FSYS] metagenome; soil
7391
7308
-
Leu
CAA
[ENA]
¢þ
>WENV180018219
FSYS01001601
[FSYS] metagenome; soil
7467
7391
-
Met
CAT
[ENA]
¢þ
>WENV180018198
FSYS01001057
[FSYS] metagenome; soil
8199
8274
+
Lys
TTT
[ENA]
¢þ
>WENV180018222
FSYS01001655
[FSYS] metagenome; soil
8337
8261
-
Val
TAC
[ENA]
¢þ
>WENV180018243
FSYS01002482
[FSYS] metagenome; soil
9430
9354
-
Met
CAT
[ENA]
¢þ
>WENV180018263
FSYS01003156
[FSYS] metagenome; soil
11837
11761
-
Val
TAC
[ENA]
¢þ
>WENV180018190
FSYS01000951
[FSYS] metagenome; soil
12249
12174
-
Trp
CCA
[ENA]
¢þ
>WENV180018209
FSYS01001338
[FSYS] metagenome; soil
15985
15894
-
Ser
CGA
[ENA]
¢þ
>WENV180018218
FSYS01001585
[FSYS] metagenome; soil
23001
22928
-
Gln
TTG
[ENA]
¢þ
>WENV180018211
FSYS01001451
[FSYS] metagenome; soil
28017
28093
+
Met
CAT
[ENA]
¢þ
>WENV180018213
FSYS01001512
[FSYS] metagenome; soil
29319
29242
-
Glu
CTC
[ENA]
¢þ
>WENV180018240
FSYS01002445
[FSYS] metagenome; soil
41788
41712
-
Pro
CGG
[ENA]
¢þ
>WENV180018249
FSYS01002710
[FSYS] metagenome; soil
62475
62548
+
Gln
CTG
[ENA]
¢þ
>WENV180018220
FSYS01001606
[FSYS] metagenome; soil
76258
76332
+
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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