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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSYW] metagenome; soil
HIT:
12 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180018330
FSYW01000102
[FSYW] metagenome; soil
567
640
+
Trp
CCA
[ENA]
¢þ
>WENV180018337
FSYW01000238
[FSYW] metagenome; soil
703
628
-
Val
TAC
[ENA]
¢þ
>WENV180018327
FSYW01000033
[FSYW] metagenome; soil
970
1054
+
Leu
CAA
[ENA]
¢þ
>WENV180018336
FSYW01000236
[FSYW] metagenome; soil
1094
1168
+
Arg
TCT
[ENA]
¢þ
>WENV180018335
FSYW01000202
[FSYW] metagenome; soil
1504
1430
-
Ala
CGC
[ENA]
¢þ
>WENV180018332
FSYW01000156
[FSYW] metagenome; soil
1595
1523
-
Gln
TTG
[ENA]
¢þ
>WENV180018333
FSYW01000182
[FSYW] metagenome; soil
1904
1985
+
Leu
TAG
[ENA]
¢þ
>WENV180018334
FSYW01000194
[FSYW] metagenome; soil
1953
2026
+
Arg
TCT
[ENA]
¢þ
>WENV180018331
FSYW01000109
[FSYW] metagenome; soil
3615
3533
-
Tyr
GTA
[ENA]
¢þ
>WENV180018326
FSYW01000017
[FSYW] metagenome; soil
4614
4688
+
Lys
TTT
[ENA]
¢þ
>WENV180018328
FSYW01000101
[FSYW] metagenome; soil
7934
8007
+
Glu
TTC
[ENA]
¢þ
>WENV180018329
FSYW01000101
[FSYW] metagenome; soil
8034
8108
+
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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