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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSYY] metagenome; soil
HIT:
37 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180018404
FSYY01000301
[FSYY] metagenome; soil
184
255
+
Trp
CCA
[ENA]
¢þ
>WENV180018398
FSYY01000230
[FSYY] metagenome; soil
684
611
-
Thr
GGT
[ENA]
¢þ
>WENV180018389
FSYY01000193
[FSYY] metagenome; soil
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180018377
FSYY01000062
[FSYY] metagenome; soil
803
731
-
Arg
CCG
[ENA]
¢þ
>WENV180018401
FSYY01000245
[FSYY] metagenome; soil
1300
1228
-
Ala
CGC
[ENA]
¢þ
>WENV180018400
FSYY01000238
[FSYY] metagenome; soil
1371
1299
-
Phe
GAA
[ENA]
¢þ
>WENV180018411
FSYY01000370
[FSYY] metagenome; soil
2018
2091
+
Arg
TCT
[ENA]
¢þ
>WENV180018378
FSYY01000074
[FSYY] metagenome; soil
2066
1995
-
Gln
TTG
[ENA]
¢þ
>WENV180018387
FSYY01000179
[FSYY] metagenome; soil
2540
2615
+
Asn
GTT
[ENA]
¢þ
>WENV180018403
FSYY01000273
[FSYY] metagenome; soil
2834
2759
-
Pro
CGG
[ENA]
¢þ
>WENV180018397
FSYY01000230
[FSYY] metagenome; soil
2908
2827
-
Tyr
GTA
[ENA]
¢þ
>WENV180018380
FSYY01000101
[FSYY] metagenome; soil
2932
3002
+
Gly
TCC
[ENA]
¢þ
>WENV180018381
FSYY01000101
[FSYY] metagenome; soil
3010
3083
+
Pro
GGG
[ENA]
¢þ
>WENV180018388
FSYY01000185
[FSYY] metagenome; soil
3998
3925
-
Thr
CGT
[ENA]
¢þ
>WENV180018390
FSYY01000197
[FSYY] metagenome; soil
4295
4385
+
Ser
GGA
[ENA]
¢þ
>WENV180018408
FSYY01000327
[FSYY] metagenome; soil
4624
4541
-
Leu
TAG
[ENA]
¢þ
>WENV180018395
FSYY01000226
[FSYY] metagenome; soil
4948
4873
-
Asp
GTC
[ENA]
¢þ
>WENV180018407
FSYY01000327
[FSYY] metagenome; soil
5229
5313
+
Leu
CAA
[ENA]
¢þ
>WENV180018376
FSYY01000028
[FSYY] metagenome; soil
5378
5451
+
Gly
CCC
[ENA]
¢þ
>WENV180018405
FSYY01000301
[FSYY] metagenome; soil
5498
5571
+
Arg
TCT
[ENA]
¢þ
>WENV180018391
FSYY01000204
[FSYY] metagenome; soil
5647
5575
-
Lys
CTT
[ENA]
¢þ
>WENV180018379
FSYY01000096
[FSYY] metagenome; soil
5708
5798
+
Ser
CGA
[ENA]
¢þ
>WENV180018386
FSYY01000174
[FSYY] metagenome; soil
5750
5824
+
Arg
ACG
[ENA]
¢þ
>WENV180018384
FSYY01000142
[FSYY] metagenome; soil
5820
5747
-
Thr
TGT
[ENA]
¢þ
>WENV180018402
FSYY01000248
[FSYY] metagenome; soil
7181
7253
+
Gln
CTG
[ENA]
¢þ
>WENV180018392
FSYY01000213
[FSYY] metagenome; soil
7955
8028
+
Met
CAT
[ENA]
¢þ
>WENV180018375
FSYY01000017
[FSYY] metagenome; soil
9931
10004
+
Pro
TGG
[ENA]
¢þ
>WENV180018393
FSYY01000226
[FSYY] metagenome; soil
11055
11128
+
Val
TAC
[ENA]
¢þ
>WENV180018406
FSYY01000301
[FSYY] metagenome; soil
11300
11373
+
His
GTG
[ENA]
¢þ
>WENV180018410
FSYY01000357
[FSYY] metagenome; soil
11847
11920
+
Val
CAC
[ENA]
¢þ
>WENV180018394
FSYY01000226
[FSYY] metagenome; soil
12621
12692
+
Lys
TTT
[ENA]
¢þ
>WENV180018399
FSYY01000235
[FSYY] metagenome; soil
13164
13235
+
Arg
CCT
[ENA]
¢þ
>WENV180018385
FSYY01000164
[FSYY] metagenome; soil
13200
13128
-
Ala
GGC
[ENA]
¢þ
>WENV180018396
FSYY01000228
[FSYY] metagenome; soil
13414
13487
+
Ile
GAT
[ENA]
¢þ
>WENV180018382
FSYY01000127
[FSYY] metagenome; soil
15454
15541
+
Leu
TAA
[ENA]
¢þ
>WENV180018383
FSYY01000127
[FSYY] metagenome; soil
19055
19128
+
fMet
CAT
[ENA]
¢þ
>WENV180018409
FSYY01000355
[FSYY] metagenome; soil
20357
20445
+
Leu
GAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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