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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSYZ] metagenome; soil
HIT:
11 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180018413
FSYZ01000121
[FSYZ] metagenome; soil
22
94
+
Cys
GCA
[ENA]
¢þ
>WENV180018419
FSYZ01000425
[FSYZ] metagenome; soil
278
197
-
Leu
GAG
[ENA]
¢þ
>WENV180018418
FSYZ01000360
[FSYZ] metagenome; soil
1481
1409
-
Cys
GCA
[ENA]
¢þ
>WENV180018414
FSYZ01000137
[FSYZ] metagenome; soil
2251
2324
+
Ala
GGC
[ENA]
¢þ
>WENV180018420
FSYZ01000426
[FSYZ] metagenome; soil
2255
2326
+
Gly
CCC
[ENA]
¢þ
>WENV180018422
FSYZ01000518
[FSYZ] metagenome; soil
2790
2717
-
Glu
TTC
[ENA]
¢þ
>WENV180018415
FSYZ01000156
[FSYZ] metagenome; soil
3354
3437
+
Leu
CAA
[ENA]
¢þ
>WENV180018421
FSYZ01000517
[FSYZ] metagenome; soil
3532
3457
-
Phe
GAA
[ENA]
¢þ
>WENV180018412
FSYZ01000054
[FSYZ] metagenome; soil
3645
3732
+
Ser
TGA
[ENA]
¢þ
>WENV180018417
FSYZ01000300
[FSYZ] metagenome; soil
7020
7091
+
Gly
TCC
[ENA]
¢þ
>WENV180018416
FSYZ01000232
[FSYZ] metagenome; soil
9202
9276
+
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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