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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[FSZH] metagenome; soil
HIT:
26 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180018444
FSZH01000118
[FSZH] metagenome; soil
11
99
+
Ser
GCT
[ENA]
¢þ
>WENV180018449
FSZH01000292
[FSZH] metagenome; soil
26
99
+
Gly
TCC
[ENA]
¢þ
>WENV180018448
FSZH01000278
[FSZH] metagenome; soil
128
53
-
Val
TAC
[ENA]
¢þ
>WENV180018439
FSZH01000011
[FSZH] metagenome; soil
261
188
-
Ala
GGC
[ENA]
¢þ
>WENV180018452
FSZH01000431
[FSZH] metagenome; soil
603
676
+
Ala
CGC
[ENA]
¢þ
>WENV180018462
FSZH01000554
[FSZH] metagenome; soil
792
709
-
Leu
GAG
[ENA]
¢þ
>WENV180018451
FSZH01000319
[FSZH] metagenome; soil
792
864
+
Gln
TTG
[ENA]
¢þ
>WENV180018453
FSZH01000437
[FSZH] metagenome; soil
1058
1140
+
Tyr
GTA
[ENA]
¢þ
>WENV180018440
FSZH01000058
[FSZH] metagenome; soil
1066
1142
+
Pro
GGG
[ENA]
¢þ
>WENV180018447
FSZH01000239
[FSZH] metagenome; soil
1125
1199
+
Thr
TGT
[ENA]
¢þ
>WENV180018455
FSZH01000453
[FSZH] metagenome; soil
1353
1278
-
Ile2
CAT
[ENA]
¢þ
>WENV180018461
FSZH01000532
[FSZH] metagenome; soil
1403
1478
+
Ala
GGC
[ENA]
¢þ
>WENV180018456
FSZH01000455
[FSZH] metagenome; soil
2546
2634
+
Ser
TGA
[ENA]
¢þ
>WENV180018443
FSZH01000089
[FSZH] metagenome; soil
2645
2572
-
Glu
CTC
[ENA]
¢þ
>WENV180018441
FSZH01000084
[FSZH] metagenome; soil
2814
2887
+
Arg
TCT
[ENA]
¢þ
>WENV180018442
FSZH01000089
[FSZH] metagenome; soil
2857
2785
-
Gln
CTG
[ENA]
¢þ
>WENV180018460
FSZH01000483
[FSZH] metagenome; soil
2860
2786
-
Lys
TTT
[ENA]
¢þ
>WENV180018459
FSZH01000459
[FSZH] metagenome; soil
2999
2925
-
Leu
TAA
[ENA]
¢þ
>WENV180018450
FSZH01000300
[FSZH] metagenome; soil
3339
3412
+
Arg
CCT
[ENA]
¢þ
>WENV180018463
FSZH01000604
[FSZH] metagenome; soil
4197
4270
+
Thr
CGT
[ENA]
¢þ
>WENV180018454
FSZH01000442
[FSZH] metagenome; soil
5289
5363
+
Met
CAT
[ENA]
¢þ
>WENV180018464
FSZH01000614
[FSZH] metagenome; soil
5405
5332
-
His
GTG
[ENA]
¢þ
>WENV180018446
FSZH01000185
[FSZH] metagenome; soil
5923
5996
+
Trp
CCA
[ENA]
¢þ
>WENV180018445
FSZH01000142
[FSZH] metagenome; soil
6042
6125
+
Leu
CAG
[ENA]
¢þ
>WENV180018458
FSZH01000457
[FSZH] metagenome; soil
6765
6690
-
Ala
TGC
[ENA]
¢þ
>WENV180018457
FSZH01000457
[FSZH] metagenome; soil
7085
7011
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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