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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSZK] metagenome; soil
HIT:
8 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180018472
FSZK01000172
[FSZK] metagenome; soil
6
96
+
Ser
GGA
[ENA]
¢þ
>WENV180018471
FSZK01000120
[FSZK] metagenome; soil
2384
2309
-
His
GTG
[ENA]
¢þ
>WENV180018470
FSZK01000120
[FSZK] metagenome; soil
2572
2497
-
Asp
GTC
[ENA]
¢þ
>WENV180018467
FSZK01000086
[FSZK] metagenome; soil
2887
2813
-
Val
CAC
[ENA]
¢þ
>WENV180018468
FSZK01000094
[FSZK] metagenome; soil
5025
4941
-
Leu
CAG
[ENA]
¢þ
>WENV180018466
FSZK01000067
[FSZK] metagenome; soil
6785
6859
+
Glu
TTC
[ENA]
¢þ
>WENV180018465
FSZK01000036
[FSZK] metagenome; soil
8019
8095
+
fMet
CAT
[ENA]
¢þ
>WENV180018469
FSZK01000108
[FSZK] metagenome; soil
12904
12828
-
Pro
CGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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