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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSZM] metagenome; soil
HIT:
37 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180018477
FSZM01000013
[FSZM] metagenome; soil
1
85
+
Leu
CAG
[ENA]
¢þ
>WENV180018498
FSZM01000099
[FSZM] metagenome; soil
77
2
-
Gly
GCC
[ENA]
¢þ
>WENV180018488
FSZM01000065
[FSZM] metagenome; soil
78
2
-
Gln
TTG
[ENA]
¢þ
>WENV180018505
FSZM01000140
[FSZM] metagenome; soil
80
5
-
Asn
GTT
[ENA]
¢þ
>WENV180018483
FSZM01000028
[FSZM] metagenome; soil
90
14
-
Arg
ACG
[ENA]
¢þ
>WENV180018506
FSZM01000141
[FSZM] metagenome; soil
154
79
-
Phe
GAA
[ENA]
¢þ
>WENV180018497
FSZM01000098
[FSZM] metagenome; soil
155
79
-
Pro
GGG
[ENA]
¢þ
>WENV180018495
FSZM01000083
[FSZM] metagenome; soil
525
450
-
Phe
GAA
[ENA]
¢þ
>WENV180018486
FSZM01000052
[FSZM] metagenome; soil
868
793
-
Arg
CCG
[ENA]
¢þ
>WENV180018487
FSZM01000053
[FSZM] metagenome; soil
1915
1831
-
Leu
GAG
[ENA]
¢þ
>WENV180018479
FSZM01000017
[FSZM] metagenome; soil
2363
2268
-
SeC
TCA
[ENA]
¢þ
>WENV180018508
FSZM01000151
[FSZM] metagenome; soil
2538
2612
+
Ala
GGC
[ENA]
¢þ
>WENV180018496
FSZM01000088
[FSZM] metagenome; soil
2873
2784
-
Ser
TGA
[ENA]
¢þ
>WENV180018481
FSZM01000021
[FSZM] metagenome; soil
3200
3114
-
Leu
TAA
[ENA]
¢þ
>WENV180018482
FSZM01000024
[FSZM] metagenome; soil
3788
3712
-
Met
CAT
[ENA]
¢þ
>WENV180018478
FSZM01000013
[FSZM] metagenome; soil
5587
5671
+
Leu
CAG
[ENA]
¢þ
>WENV180018484
FSZM01000046
[FSZM] metagenome; soil
9885
9961
+
Pro
TGG
[ENA]
¢þ
>WENV180018485
FSZM01000046
[FSZM] metagenome; soil
10037
10113
+
Arg
TCT
[ENA]
¢þ
>WENV180018503
FSZM01000117
[FSZM] metagenome; soil
10040
9964
-
Asp
GTC
[ENA]
¢þ
>WENV180018502
FSZM01000117
[FSZM] metagenome; soil
10143
10067
-
Asp
GTC
[ENA]
¢þ
>WENV180018493
FSZM01000081
[FSZM] metagenome; soil
15153
15061
-
Ser
GCT
[ENA]
¢þ
>WENV180018489
FSZM01000069
[FSZM] metagenome; soil
15976
16060
+
Tyr
GTA
[ENA]
¢þ
>WENV180018490
FSZM01000069
[FSZM] metagenome; soil
16110
16183
+
Gly
TCC
[ENA]
¢þ
>WENV180018504
FSZM01000125
[FSZM] metagenome; soil
16555
16644
+
Ser
CGA
[ENA]
¢þ
>WENV180018509
FSZM01000155
[FSZM] metagenome; soil
16637
16713
+
Pro
TGG
[ENA]
¢þ
>WENV180018480
FSZM01000018
[FSZM] metagenome; soil
17814
17740
-
Thr
GGT
[ENA]
¢þ
>WENV180018494
FSZM01000083
[FSZM] metagenome; soil
19800
19725
-
Phe
GAA
[ENA]
¢þ
>WENV180018499
FSZM01000110
[FSZM] metagenome; soil
23336
23412
+
fMet
CAT
[ENA]
¢þ
>WENV180018511
FSZM01000165
[FSZM] metagenome; soil
24640
24550
-
Ser
GGA
[ENA]
¢þ
>WENV180018475
FSZM01000006
[FSZM] metagenome; soil
25707
25782
+
Val
TAC
[ENA]
¢þ
>WENV180018476
FSZM01000006
[FSZM] metagenome; soil
25805
25881
+
Asp
GTC
[ENA]
¢þ
>WENV180018491
FSZM01000072
[FSZM] metagenome; soil
26976
27060
+
Leu
CAG
[ENA]
¢þ
>WENV180018492
FSZM01000072
[FSZM] metagenome; soil
28449
28533
+
Leu
CAG
[ENA]
¢þ
>WENV180018510
FSZM01000165
[FSZM] metagenome; soil
29486
29561
+
His
GTG
[ENA]
¢þ
>WENV180018501
FSZM01000110
[FSZM] metagenome; soil
31524
31449
-
Glu
TTC
[ENA]
¢þ
>WENV180018500
FSZM01000110
[FSZM] metagenome; soil
31637
31562
-
Glu
TTC
[ENA]
¢þ
>WENV180018507
FSZM01000144
[FSZM] metagenome; soil
36821
36746
-
Gly
GCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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