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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSZO] metagenome; soil
HIT:
10 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180018520
FSZO01000143
[FSZO] metagenome; soil
18
92
+
Ala
GGC
[ENA]
¢þ
>WENV180018514
FSZO01000070
[FSZO] metagenome; soil
23
97
+
Arg
CCG
[ENA]
¢þ
>WENV180018521
FSZO01000159
[FSZO] metagenome; soil
1956
1883
-
Gln
TTG
[ENA]
¢þ
>WENV180018512
FSZO01000057
[FSZO] metagenome; soil
3177
3259
+
Leu
TAG
[ENA]
¢þ
>WENV180018519
FSZO01000123
[FSZO] metagenome; soil
3431
3517
+
Ser
TGA
[ENA]
¢þ
>WENV180018517
FSZO01000105
[FSZO] metagenome; soil
5224
5300
+
Leu
TAA
[ENA]
¢þ
>WENV180018513
FSZO01000069
[FSZO] metagenome; soil
7242
7317
+
Gly
GCC
[ENA]
¢þ
>WENV180018515
FSZO01000087
[FSZO] metagenome; soil
10186
10260
+
Cys
GCA
[ENA]
¢þ
>WENV180018516
FSZO01000090
[FSZO] metagenome; soil
14347
14275
-
Gly
TCC
[ENA]
¢þ
>WENV180018518
FSZO01000114
[FSZO] metagenome; soil
16093
16166
+
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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