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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[FSZR] metagenome; soil
HIT:
40 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180018551
FSZR01001477
[FSZR] metagenome; soil
6
79
+
Cys
GCA
[ENA]
¢þ
>WENV180018532
FSZR01000618
[FSZR] metagenome; soil
6
90
+
Leu
CAG
[ENA]
¢þ
>WENV180018544
FSZR01001089
[FSZR] metagenome; soil
11
95
+
Leu
CAA
[ENA]
¢þ
>WENV180018562
FSZR01001931
[FSZR] metagenome; soil
12
99
+
Leu
TAA
[ENA]
¢þ
>WENV180018529
FSZR01000358
[FSZR] metagenome; soil
18
94
+
fMet
CAT
[ENA]
¢þ
>WENV180018558
FSZR01001691
[FSZR] metagenome; soil
21
96
+
Phe
GAA
[ENA]
¢þ
>WENV180018547
FSZR01001249
[FSZR] metagenome; soil
74
-1
-
His
GTG
[ENA]
¢þ
>WENV180018528
FSZR01000246
[FSZR] metagenome; soil
88
4
-
Leu
GAG
[ENA]
¢þ
>WENV180018533
FSZR01000618
[FSZR] metagenome; soil
104
178
+
Gln
TTG
[ENA]
¢þ
>WENV180018552
FSZR01001477
[FSZR] metagenome; soil
137
212
+
Gly
GCC
[ENA]
¢þ
>WENV180018545
FSZR01001165
[FSZR] metagenome; soil
280
370
+
Ser
GGA
[ENA]
¢þ
>WENV180018554
FSZR01001487
[FSZR] metagenome; soil
347
272
-
Asp
GTC
[ENA]
¢þ
>WENV180018560
FSZR01001761
[FSZR] metagenome; soil
351
426
+
Thr
TGT
[ENA]
¢þ
>WENV180018542
FSZR01001019
[FSZR] metagenome; soil
391
475
+
Leu
CAA
[ENA]
¢þ
>WENV180018524
FSZR01000009
[FSZR] metagenome; soil
571
646
+
Phe
GAA
[ENA]
¢þ
>WENV180018553
FSZR01001477
[FSZR] metagenome; soil
1501
1592
+
Leu
TAA
[ENA]
¢þ
>WENV180018534
FSZR01000665
[FSZR] metagenome; soil
1744
1668
-
Pro
CGG
[ENA]
¢þ
>WENV180018536
FSZR01000788
[FSZR] metagenome; soil
1809
1884
+
Glu
TTC
[ENA]
¢þ
>WENV180018537
FSZR01000788
[FSZR] metagenome; soil
1981
2055
+
Asp
GTC
[ENA]
¢þ
>WENV180018546
FSZR01001249
[FSZR] metagenome; soil
2224
2149
-
Val
TAC
[ENA]
¢þ
>WENV180018543
FSZR01001050
[FSZR] metagenome; soil
2380
2304
-
Arg
TCT
[ENA]
¢þ
>WENV180018556
FSZR01001614
[FSZR] metagenome; soil
2436
2510
+
Val
CAC
[ENA]
¢þ
>WENV180018527
FSZR01000244
[FSZR] metagenome; soil
2584
2668
+
Leu
GAG
[ENA]
¢þ
>WENV180018555
FSZR01001524
[FSZR] metagenome; soil
2787
2860
+
Asn
GTT
[ENA]
¢þ
>WENV180018548
FSZR01001280
[FSZR] metagenome; soil
2792
2708
-
Leu
CAA
[ENA]
¢þ
>WENV180018540
FSZR01000857
[FSZR] metagenome; soil
2855
2931
+
Arg
CCG
[ENA]
¢þ
>WENV180018538
FSZR01000800
[FSZR] metagenome; soil
2883
2958
+
Ala
CGC
[ENA]
¢þ
>WENV180018559
FSZR01001707
[FSZR] metagenome; soil
2995
2920
-
Arg
CCG
[ENA]
¢þ
>WENV180018526
FSZR01000098
[FSZR] metagenome; soil
3111
3038
-
Gly
CCC
[ENA]
¢þ
>WENV180018563
FSZR01001945
[FSZR] metagenome; soil
3200
3124
-
Arg
CCG
[ENA]
¢þ
>WENV180018525
FSZR01000054
[FSZR] metagenome; soil
4370
4278
-
Ser
GCT
[ENA]
¢þ
>WENV180018530
FSZR01000417
[FSZR] metagenome; soil
5326
5250
-
Pro
TGG
[ENA]
¢þ
>WENV180018535
FSZR01000726
[FSZR] metagenome; soil
6095
6001
-
SeC
TCA
[ENA]
¢þ
>WENV180018549
FSZR01001408
[FSZR] metagenome; soil
6207
6132
-
Phe
GAA
[ENA]
¢þ
>WENV180018561
FSZR01001913
[FSZR] metagenome; soil
7189
7264
+
fMet
CAT
[ENA]
¢þ
>WENV180018539
FSZR01000841
[FSZR] metagenome; soil
9192
9116
-
Ile2
CAT
[ENA]
¢þ
>WENV180018541
FSZR01000903
[FSZR] metagenome; soil
10671
10584
-
Ser
TGA
[ENA]
¢þ
>WENV180018557
FSZR01001682
[FSZR] metagenome; soil
16620
16545
-
Thr
TGT
[ENA]
¢þ
>WENV180018531
FSZR01000431
[FSZR] metagenome; soil
17702
17626
-
Met
CAT
[ENA]
¢þ
>WENV180018550
FSZR01001456
[FSZR] metagenome; soil
31556
31481
-
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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