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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSZS] metagenome; soil
HIT:
23 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180018567
FSZS01000087
[FSZS] metagenome; soil
4
80
+
fMet
CAT
[ENA]
¢þ
>WENV180018583
FSZS01000421
[FSZS] metagenome; soil
16
92
+
Pro
CGG
[ENA]
¢þ
>WENV180018565
FSZS01000041
[FSZS] metagenome; soil
18
94
+
fMet
CAT
[ENA]
¢þ
>WENV180018581
FSZS01000364
[FSZS] metagenome; soil
21
97
+
Ile2
CAT
[ENA]
¢þ
>WENV180018573
FSZS01000227
[FSZS] metagenome; soil
22
97
+
Phe
GAA
[ENA]
¢þ
>WENV180018582
FSZS01000390
[FSZS] metagenome; soil
118
192
+
Val
CAC
[ENA]
¢þ
>WENV180018568
FSZS01000115
[FSZS] metagenome; soil
163
239
+
Arg
CCG
[ENA]
¢þ
>WENV180018566
FSZS01000084
[FSZS] metagenome; soil
286
360
+
Val
CAC
[ENA]
¢þ
>WENV180018576
FSZS01000327
[FSZS] metagenome; soil
1010
1085
+
Glu
TTC
[ENA]
¢þ
>WENV180018577
FSZS01000327
[FSZS] metagenome; soil
1117
1191
+
Asp
GTC
[ENA]
¢þ
>WENV180018580
FSZS01000341
[FSZS] metagenome; soil
1789
1715
-
Lys
TTT
[ENA]
¢þ
>WENV180018578
FSZS01000331
[FSZS] metagenome; soil
2445
2529
+
Leu
CAG
[ENA]
¢þ
>WENV180018564
FSZS01000037
[FSZS] metagenome; soil
2470
2395
-
Thr
CGT
[ENA]
¢þ
>WENV180018572
FSZS01000192
[FSZS] metagenome; soil
2500
2415
-
Ser
TGA
[ENA]
¢þ
>WENV180018586
FSZS01000509
[FSZS] metagenome; soil
3114
3027
-
Ser
TGA
[ENA]
¢þ
>WENV180018584
FSZS01000431
[FSZS] metagenome; soil
5621
5545
-
Met
CAT
[ENA]
¢þ
>WENV180018579
FSZS01000340
[FSZS] metagenome; soil
6056
6132
+
fMet
CAT
[ENA]
¢þ
>WENV180018575
FSZS01000301
[FSZS] metagenome; soil
6204
6130
-
Leu
TAA
[ENA]
¢þ
>WENV180018574
FSZS01000297
[FSZS] metagenome; soil
7049
6974
-
Phe
GAA
[ENA]
¢þ
>WENV180018570
FSZS01000153
[FSZS] metagenome; soil
7071
6984
-
Ser
CGA
[ENA]
¢þ
>WENV180018585
FSZS01000465
[FSZS] metagenome; soil
9984
9908
-
Ala
GGC
[ENA]
¢þ
>WENV180018569
FSZS01000118
[FSZS] metagenome; soil
15692
15616
-
Met
CAT
[ENA]
¢þ
>WENV180018571
FSZS01000188
[FSZS] metagenome; soil
21034
20959
-
Lys
CTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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