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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FSZW] metagenome; soil
HIT:
8 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180018593
FSZW01000101
[FSZW] metagenome; soil
19
95
+
Pro
GGG
[ENA]
¢þ
>WENV180018590
FSZW01000037
[FSZW] metagenome; soil
78
2
-
Arg
ACG
[ENA]
¢þ
>WENV180018592
FSZW01000082
[FSZW] metagenome; soil
85
10
-
Lys
CTT
[ENA]
¢þ
>WENV180018589
FSZW01000034
[FSZW] metagenome; soil
91
165
+
Gly
GCC
[ENA]
¢þ
>WENV180018595
FSZW01000161
[FSZW] metagenome; soil
1484
1408
-
Asp
GTC
[ENA]
¢þ
>WENV180018591
FSZW01000053
[FSZW] metagenome; soil
2480
2552
+
Ala
CGC
[ENA]
¢þ
>WENV180018596
FSZW01000280
[FSZW] metagenome; soil
5068
4994
-
Thr
GGT
[ENA]
¢þ
>WENV180018594
FSZW01000117
[FSZW] metagenome; soil
9026
8951
-
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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