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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSZX] metagenome; soil
HIT:
8 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180018600
FSZX01000042
[FSZX] metagenome; soil
308
381
+
Gly
TCC
[ENA]
¢þ
>WENV180018601
FSZX01000049
[FSZX] metagenome; soil
631
705
+
Val
CAC
[ENA]
¢þ
>WENV180018597
FSZX01000001
[FSZX] metagenome; soil
750
824
+
Val
TAC
[ENA]
¢þ
>WENV180018602
FSZX01000056
[FSZX] metagenome; soil
1774
1701
-
Ile2
CAT
[ENA]
¢þ
>WENV180018599
FSZX01000018
[FSZX] metagenome; soil
4171
4245
+
Thr
GGT
[ENA]
¢þ
>WENV180018604
FSZX01000083
[FSZX] metagenome; soil
4483
4408
-
Ala
CGC
[ENA]
¢þ
>WENV180018598
FSZX01000015
[FSZX] metagenome; soil
5141
5230
+
Ser
GGA
[ENA]
¢þ
>WENV180018603
FSZX01000059
[FSZX] metagenome; soil
5658
5734
+
Pro
TGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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