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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTAE] metagenome; soil
HIT:
11 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180018624
FTAE01000108
[FTAE] metagenome; soil
5
88
+
Leu
GAG
[ENA]
¢þ
>WENV180018631
FTAE01000174
[FTAE] metagenome; soil
73
-1
-
fMet
CAT
[ENA]
¢þ
>WENV180018626
FTAE01000141
[FTAE] metagenome; soil
1928
1855
-
Gln
TTG
[ENA]
¢þ
>WENV180018621
FTAE01000014
[FTAE] metagenome; soil
1947
2019
+
Val
TAC
[ENA]
¢þ
>WENV180018622
FTAE01000051
[FTAE] metagenome; soil
2402
2475
+
Gly
CCC
[ENA]
¢þ
>WENV180018623
FTAE01000058
[FTAE] metagenome; soil
4405
4331
-
fMet
CAT
[ENA]
¢þ
>WENV180018630
FTAE01000148
[FTAE] metagenome; soil
4563
4491
-
Gln
CTG
[ENA]
¢þ
>WENV180018629
FTAE01000148
[FTAE] metagenome; soil
4831
4758
-
Glu
CTC
[ENA]
¢þ
>WENV180018628
FTAE01000148
[FTAE] metagenome; soil
4971
4896
-
Glu
CTC
[ENA]
¢þ
>WENV180018627
FTAE01000148
[FTAE] metagenome; soil
5092
5019
-
Glu
CTC
[ENA]
¢þ
>WENV180018625
FTAE01000135
[FTAE] metagenome; soil
13609
13537
-
Gly
TCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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