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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTAG] metagenome; soil
HIT:
81 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180018667
FTAG01000866
[FTAG] metagenome; soil
44
129
+
Leu
TAA
[ENA]
¢þ
>WENV180018699
FTAG01001997
[FTAG] metagenome; soil
69
144
+
Phe
GAA
[ENA]
¢þ
>WENV180018656
FTAG01000555
[FTAG] metagenome; soil
82
7
-
Ile2
CAT
[ENA]
¢þ
>WENV180018668
FTAG01000866
[FTAG] metagenome; soil
138
214
+
Arg
CCT
[ENA]
¢þ
>WENV180018672
FTAG01000927
[FTAG] metagenome; soil
150
66
-
Leu
TAA
[ENA]
¢þ
>WENV180018700
FTAG01002040
[FTAG] metagenome; soil
219
295
+
Pro
CGG
[ENA]
¢þ
>WENV180018669
FTAG01000866
[FTAG] metagenome; soil
220
312
+
Ser
TGA
[ENA]
¢þ
>WENV180018649
FTAG01000383
[FTAG] metagenome; soil
261
345
+
Leu
TAG
[ENA]
¢þ
>WENV180018688
FTAG01001720
[FTAG] metagenome; soil
288
214
-
Val
GAC
[ENA]
¢þ
>WENV180018637
FTAG01000226
[FTAG] metagenome; soil
300
373
+
Gln
CTG
[ENA]
¢þ
>WENV180018679
FTAG01001374
[FTAG] metagenome; soil
317
228
-
Ser
CGA
[ENA]
¢þ
>WENV180018691
FTAG01001860
[FTAG] metagenome; soil
388
312
-
Met
CAT
[ENA]
¢þ
>WENV180018653
FTAG01000422
[FTAG] metagenome; soil
400
476
+
Ile2
CAT
[ENA]
¢þ
>WENV180018671
FTAG01000905
[FTAG] metagenome; soil
551
476
-
Glu
CTC
[ENA]
¢þ
>WENV180018665
FTAG01000781
[FTAG] metagenome; soil
562
638
+
Asp
GTC
[ENA]
¢þ
>WENV180018666
FTAG01000802
[FTAG] metagenome; soil
711
636
-
Ile2
CAT
[ENA]
¢þ
>WENV180018712
FTAG01002278
[FTAG] metagenome; soil
795
870
+
Lys
CTT
[ENA]
¢þ
>WENV180018677
FTAG01001370
[FTAG] metagenome; soil
821
912
+
Ser
GCT
[ENA]
¢þ
>WENV180018675
FTAG01001262
[FTAG] metagenome; soil
913
838
-
Phe
GAA
[ENA]
¢þ
>WENV180018678
FTAG01001370
[FTAG] metagenome; soil
947
1023
+
Arg
ACG
[ENA]
¢þ
>WENV180018639
FTAG01000258
[FTAG] metagenome; soil
970
1062
+
Ser
GCT
[ENA]
¢þ
>WENV180018686
FTAG01001607
[FTAG] metagenome; soil
980
894
-
Leu
TAA
[ENA]
¢þ
>WENV180018696
FTAG01001963
[FTAG] metagenome; soil
1020
933
-
Leu
CAA
[ENA]
¢þ
>WENV180018640
FTAG01000258
[FTAG] metagenome; soil
1096
1172
+
Arg
ACG
[ENA]
¢þ
>WENV180018634
FTAG01000028
[FTAG] metagenome; soil
1107
1031
-
Arg
TCT
[ENA]
¢þ
>WENV180018685
FTAG01001607
[FTAG] metagenome; soil
1155
1082
-
Cys
GCA
[ENA]
¢þ
>WENV180018674
FTAG01001142
[FTAG] metagenome; soil
1155
1229
+
Val
CAC
[ENA]
¢þ
>WENV180018643
FTAG01000277
[FTAG] metagenome; soil
1323
1398
+
Ala
CGC
[ENA]
¢þ
>WENV180018684
FTAG01001607
[FTAG] metagenome; soil
1352
1277
-
Gly
GCC
[ENA]
¢þ
>WENV180018692
FTAG01001901
[FTAG] metagenome; soil
1384
1308
-
Met
CAT
[ENA]
¢þ
>WENV180018705
FTAG01002123
[FTAG] metagenome; soil
1680
1604
-
Arg
TCT
[ENA]
¢þ
>WENV180018647
FTAG01000303
[FTAG] metagenome; soil
1718
1793
+
Val
TAC
[ENA]
¢þ
>WENV180018648
FTAG01000303
[FTAG] metagenome; soil
1832
1908
+
Asp
GTC
[ENA]
¢þ
>WENV180018670
FTAG01000866
[FTAG] metagenome; soil
1881
1955
+
Met
CAT
[ENA]
¢þ
>WENV180018664
FTAG01000758
[FTAG] metagenome; soil
1948
2022
+
Glu
TTC
[ENA]
¢þ
>WENV180018644
FTAG01000294
[FTAG] metagenome; soil
2102
2026
-
Arg
CCG
[ENA]
¢þ
>WENV180018704
FTAG01002123
[FTAG] metagenome; soil
2118
2042
-
Pro
TGG
[ENA]
¢þ
>WENV180018697
FTAG01001973
[FTAG] metagenome; soil
2121
2045
-
Arg
CCT
[ENA]
¢þ
>WENV180018695
FTAG01001939
[FTAG] metagenome; soil
2121
2047
-
Gln
TTG
[ENA]
¢þ
>WENV180018683
FTAG01001481
[FTAG] metagenome; soil
2122
2048
-
Thr
GGT
[ENA]
¢þ
>WENV180018661
FTAG01000690
[FTAG] metagenome; soil
2127
2051
-
Arg
CCG
[ENA]
¢þ
>WENV180018663
FTAG01000693
[FTAG] metagenome; soil
2537
2463
-
Gln
TTG
[ENA]
¢þ
>WENV180018701
FTAG01002057
[FTAG] metagenome; soil
2544
2620
+
Pro
GGG
[ENA]
¢þ
>WENV180018703
FTAG01002111
[FTAG] metagenome; soil
2556
2632
+
Pro
TGG
[ENA]
¢þ
>WENV180018658
FTAG01000613
[FTAG] metagenome; soil
2720
2793
+
Gln
CTG
[ENA]
¢þ
>WENV180018635
FTAG01000125
[FTAG] metagenome; soil
2787
2876
+
Ser
TGA
[ENA]
¢þ
>WENV180018636
FTAG01000193
[FTAG] metagenome; soil
2796
2704
-
Ser
GGA
[ENA]
¢þ
>WENV180018680
FTAG01001382
[FTAG] metagenome; soil
2962
3046
+
Leu
CAG
[ENA]
¢þ
>WENV180018682
FTAG01001432
[FTAG] metagenome; soil
3104
3029
-
Thr
CGT
[ENA]
¢þ
>WENV180018676
FTAG01001295
[FTAG] metagenome; soil
3135
3224
+
Ser
TGA
[ENA]
¢þ
>WENV180018659
FTAG01000618
[FTAG] metagenome; soil
3170
3254
+
Leu
GAG
[ENA]
¢þ
>WENV180018657
FTAG01000560
[FTAG] metagenome; soil
3210
3302
+
Ser
GCT
[ENA]
¢þ
>WENV180018654
FTAG01000502
[FTAG] metagenome; soil
3346
3421
+
Lys
TTT
[ENA]
¢þ
>WENV180018662
FTAG01000691
[FTAG] metagenome; soil
3458
3532
+
Gly
CCC
[ENA]
¢þ
>WENV180018633
FTAG01000028
[FTAG] metagenome; soil
4278
4189
-
Ser
TGA
[ENA]
¢þ
>WENV180018689
FTAG01001824
[FTAG] metagenome; soil
4365
4290
-
Glu
CTC
[ENA]
¢þ
>WENV180018632
FTAG01000015
[FTAG] metagenome; soil
4494
4418
-
Ile2
CAT
[ENA]
¢þ
>WENV180018706
FTAG01002129
[FTAG] metagenome; soil
4906
4830
-
Pro
TGG
[ENA]
¢þ
>WENV180018710
FTAG01002223
[FTAG] metagenome; soil
5071
4996
-
Asn
GTT
[ENA]
¢þ
>WENV180018694
FTAG01001935
[FTAG] metagenome; soil
6025
5952
-
Gln
CTG
[ENA]
¢þ
>WENV180018693
FTAG01001907
[FTAG] metagenome; soil
6346
6271
-
Phe
GAA
[ENA]
¢þ
>WENV180018638
FTAG01000246
[FTAG] metagenome; soil
6947
7023
+
Met
CAT
[ENA]
¢þ
>WENV180018708
FTAG01002132
[FTAG] metagenome; soil
7562
7488
-
Lys
CTT
[ENA]
¢þ
>WENV180018707
FTAG01002132
[FTAG] metagenome; soil
7659
7583
-
His
GTG
[ENA]
¢þ
>WENV180018702
FTAG01002061
[FTAG] metagenome; soil
7918
7991
+
Gly
CCC
[ENA]
¢þ
>WENV180018673
FTAG01001118
[FTAG] metagenome; soil
8822
8893
+
Val
CAC
[ENA]
¢þ
>WENV180018681
FTAG01001423
[FTAG] metagenome; soil
9152
9227
+
Ile2
CAT
[ENA]
¢þ
>WENV180018641
FTAG01000270
[FTAG] metagenome; soil
10449
10536
+
Leu
CAA
[ENA]
¢þ
>WENV180018660
FTAG01000619
[FTAG] metagenome; soil
10704
10779
+
Thr
TGT
[ENA]
¢þ
>WENV180018687
FTAG01001622
[FTAG] metagenome; soil
11198
11272
+
Val
CAC
[ENA]
¢þ
>WENV180018646
FTAG01000300
[FTAG] metagenome; soil
12855
12781
-
Lys
CTT
[ENA]
¢þ
>WENV180018645
FTAG01000300
[FTAG] metagenome; soil
12947
12871
-
His
GTG
[ENA]
¢þ
>WENV180018650
FTAG01000389
[FTAG] metagenome; soil
13671
13756
+
Tyr
GTA
[ENA]
¢þ
>WENV180018709
FTAG01002223
[FTAG] metagenome; soil
13703
13779
+
Val
GAC
[ENA]
¢þ
>WENV180018651
FTAG01000389
[FTAG] metagenome; soil
13805
13878
+
Gly
TCC
[ENA]
¢þ
>WENV180018652
FTAG01000389
[FTAG] metagenome; soil
13921
13996
+
Thr
GGT
[ENA]
¢þ
>WENV180018690
FTAG01001831
[FTAG] metagenome; soil
17021
17097
+
Arg
CCT
[ENA]
¢þ
>WENV180018698
FTAG01001988
[FTAG] metagenome; soil
24347
24271
-
Pro
CGG
[ENA]
¢þ
>WENV180018655
FTAG01000533
[FTAG] metagenome; soil
32763
32671
-
Ser
GGA
[ENA]
¢þ
>WENV180018711
FTAG01002238
[FTAG] metagenome; soil
35248
35173
-
Glu
CTC
[ENA]
¢þ
>WENV180018642
FTAG01000273
[FTAG] metagenome; soil
43884
43976
+
Ser
CGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK