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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTAI] metagenome; soil
HIT:
94 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180018752
FTAI01000819
[FTAI] metagenome; soil
5
80
+
Asn
GTT
[ENA]
¢þ
>WENV180018748
FTAI01000747
[FTAI] metagenome; soil
13
99
+
Leu
CAG
[ENA]
¢þ
>WENV180018767
FTAI01001131
[FTAI] metagenome; soil
81
7
-
Lys
TTT
[ENA]
¢þ
>WENV180018717
FTAI01000046
[FTAI] metagenome; soil
91
18
-
Gly
TCC
[ENA]
¢þ
>WENV180018759
FTAI01000970
[FTAI] metagenome; soil
119
43
-
Arg
ACG
[ENA]
¢þ
>WENV180018733
FTAI01000415
[FTAI] metagenome; soil
137
212
+
Ile2
CAT
[ENA]
¢þ
>WENV180018765
FTAI01001103
[FTAI] metagenome; soil
143
216
+
Gly
CCC
[ENA]
¢þ
>WENV180018716
FTAI01000046
[FTAI] metagenome; soil
200
116
-
Tyr
GTA
[ENA]
¢þ
>WENV180018764
FTAI01001098
[FTAI] metagenome; soil
223
150
-
Gly
TCC
[ENA]
¢þ
>WENV180018715
FTAI01000004
[FTAI] metagenome; soil
285
209
-
Arg
TCT
[ENA]
¢þ
>WENV180018792
FTAI01001714
[FTAI] metagenome; soil
297
221
-
Arg
CCG
[ENA]
¢þ
>WENV180018744
FTAI01000693
[FTAI] metagenome; soil
323
399
+
Pro
TGG
[ENA]
¢þ
>WENV180018766
FTAI01001107
[FTAI] metagenome; soil
359
435
+
His
GTG
[ENA]
¢þ
>WENV180018753
FTAI01000826
[FTAI] metagenome; soil
362
436
+
Gly
CCC
[ENA]
¢þ
>WENV180018763
FTAI01001098
[FTAI] metagenome; soil
383
300
-
Tyr
GTA
[ENA]
¢þ
>WENV180018769
FTAI01001166
[FTAI] metagenome; soil
484
560
+
fMet
CAT
[ENA]
¢þ
>WENV180018768
FTAI01001151
[FTAI] metagenome; soil
506
432
-
Thr
GGT
[ENA]
¢þ
>WENV180018746
FTAI01000710
[FTAI] metagenome; soil
511
437
-
Lys
TTT
[ENA]
¢þ
>WENV180018787
FTAI01001641
[FTAI] metagenome; soil
516
602
+
Leu
CAG
[ENA]
¢þ
>WENV180018755
FTAI01000866
[FTAI] metagenome; soil
547
473
-
Val
GAC
[ENA]
¢þ
>WENV180018754
FTAI01000837
[FTAI] metagenome; soil
620
544
-
Arg
ACG
[ENA]
¢þ
>WENV180018714
FTAI01000004
[FTAI] metagenome; soil
737
661
-
Pro
TGG
[ENA]
¢þ
>WENV180018745
FTAI01000693
[FTAI] metagenome; soil
753
829
+
Arg
TCT
[ENA]
¢þ
>WENV180018741
FTAI01000610
[FTAI] metagenome; soil
803
729
-
Thr
GGT
[ENA]
¢þ
>WENV180018802
FTAI01001783
[FTAI] metagenome; soil
817
742
-
Lys
CTT
[ENA]
¢þ
>WENV180018732
FTAI01000396
[FTAI] metagenome; soil
1012
936
-
Arg
CCT
[ENA]
¢þ
>WENV180018770
FTAI01001229
[FTAI] metagenome; soil
1182
1098
-
Leu
GAG
[ENA]
¢þ
>WENV180018797
FTAI01001778
[FTAI] metagenome; soil
1231
1147
-
Leu
TAG
[ENA]
¢þ
>WENV180018743
FTAI01000668
[FTAI] metagenome; soil
1244
1319
+
Ala
CGC
[ENA]
¢þ
>WENV180018735
FTAI01000483
[FTAI] metagenome; soil
1319
1393
+
Val
GAC
[ENA]
¢þ
>WENV180018749
FTAI01000751
[FTAI] metagenome; soil
1335
1411
+
Pro
GGG
[ENA]
¢þ
>WENV180018736
FTAI01000505
[FTAI] metagenome; soil
1336
1261
-
Trp
CCA
[ENA]
¢þ
>WENV180018806
FTAI01001820
[FTAI] metagenome; soil
1452
1379
-
Gln
TTG
[ENA]
¢þ
>WENV180018718
FTAI01000050
[FTAI] metagenome; soil
1491
1566
+
Ala
CGC
[ENA]
¢þ
>WENV180018760
FTAI01001010
[FTAI] metagenome; soil
1579
1655
+
His
GTG
[ENA]
¢þ
>WENV180018756
FTAI01000897
[FTAI] metagenome; soil
1635
1711
+
His
GTG
[ENA]
¢þ
>WENV180018738
FTAI01000528
[FTAI] metagenome; soil
1657
1568
-
Ser
GGA
[ENA]
¢þ
>WENV180018742
FTAI01000653
[FTAI] metagenome; soil
1704
1780
+
Asp
GTC
[ENA]
¢þ
>WENV180018783
FTAI01001569
[FTAI] metagenome; soil
1759
1833
+
Glu
TTC
[ENA]
¢þ
>WENV180018740
FTAI01000567
[FTAI] metagenome; soil
1871
1797
-
Glu
TTC
[ENA]
¢þ
>WENV180018774
FTAI01001370
[FTAI] metagenome; soil
1979
1883
-
SeC
TCA
[ENA]
¢þ
>WENV180018805
FTAI01001820
[FTAI] metagenome; soil
1990
2066
+
Pro
CGG
[ENA]
¢þ
>WENV180018776
FTAI01001413
[FTAI] metagenome; soil
2234
2149
-
Leu
TAA
[ENA]
¢þ
>WENV180018761
FTAI01001058
[FTAI] metagenome; soil
2271
2197
-
Gly
GCC
[ENA]
¢þ
>WENV180018720
FTAI01000079
[FTAI] metagenome; soil
2399
2473
+
Val
GAC
[ENA]
¢þ
>WENV180018713
FTAI01000004
[FTAI] metagenome; soil
2452
2378
-
Glu
TTC
[ENA]
¢þ
>WENV180018777
FTAI01001442
[FTAI] metagenome; soil
2488
2563
+
Ala
GGC
[ENA]
¢þ
>WENV180018790
FTAI01001687
[FTAI] metagenome; soil
2507
2423
-
Leu
GAG
[ENA]
¢þ
>WENV180018781
FTAI01001492
[FTAI] metagenome; soil
2930
2846
-
Leu
CAA
[ENA]
¢þ
>WENV180018795
FTAI01001745
[FTAI] metagenome; soil
3147
3071
-
His
GTG
[ENA]
¢þ
>WENV180018796
FTAI01001747
[FTAI] metagenome; soil
3237
3326
+
Ser
GGA
[ENA]
¢þ
>WENV180018789
FTAI01001673
[FTAI] metagenome; soil
3374
3286
-
Leu
TAA
[ENA]
¢þ
>WENV180018801
FTAI01001782
[FTAI] metagenome; soil
3404
3479
+
Thr
CGT
[ENA]
¢þ
>WENV180018719
FTAI01000068
[FTAI] metagenome; soil
3665
3754
+
Ser
GCT
[ENA]
¢þ
>WENV180018773
FTAI01001353
[FTAI] metagenome; soil
3667
3743
+
Val
TAC
[ENA]
¢þ
>WENV180018757
FTAI01000911
[FTAI] metagenome; soil
3680
3605
-
Ala
GGC
[ENA]
¢þ
>WENV180018734
FTAI01000420
[FTAI] metagenome; soil
3892
3817
-
Asn
GTT
[ENA]
¢þ
>WENV180018739
FTAI01000535
[FTAI] metagenome; soil
3910
3836
-
Val
CAC
[ENA]
¢þ
>WENV180018723
FTAI01000200
[FTAI] metagenome; soil
3919
3830
-
Ser
TGA
[ENA]
¢þ
>WENV180018747
FTAI01000722
[FTAI] metagenome; soil
3995
3920
-
Lys
CTT
[ENA]
¢þ
>WENV180018751
FTAI01000777
[FTAI] metagenome; soil
4349
4435
+
Leu
CAG
[ENA]
¢þ
>WENV180018804
FTAI01001804
[FTAI] metagenome; soil
4613
4689
+
Arg
CCG
[ENA]
¢þ
>WENV180018793
FTAI01001736
[FTAI] metagenome; soil
4673
4749
+
Arg
CCT
[ENA]
¢þ
>WENV180018722
FTAI01000121
[FTAI] metagenome; soil
5368
5442
+
Gly
GCC
[ENA]
¢þ
>WENV180018758
FTAI01000941
[FTAI] metagenome; soil
5564
5638
+
Thr
GGT
[ENA]
¢þ
>WENV180018786
FTAI01001628
[FTAI] metagenome; soil
5610
5534
-
Arg
TCT
[ENA]
¢þ
>WENV180018782
FTAI01001562
[FTAI] metagenome; soil
5873
5957
+
Leu
TAG
[ENA]
¢þ
>WENV180018726
FTAI01000227
[FTAI] metagenome; soil
5946
6030
+
Leu
GAG
[ENA]
¢þ
>WENV180018737
FTAI01000517
[FTAI] metagenome; soil
6017
5942
-
Ala
GGC
[ENA]
¢þ
>WENV180018785
FTAI01001628
[FTAI] metagenome; soil
6030
5954
-
Pro
TGG
[ENA]
¢þ
>WENV180018798
FTAI01001779
[FTAI] metagenome; soil
6033
6107
+
Glu
TTC
[ENA]
¢þ
>WENV180018728
FTAI01000292
[FTAI] metagenome; soil
6339
6414
+
Ile2
CAT
[ENA]
¢þ
>WENV180018794
FTAI01001745
[FTAI] metagenome; soil
6874
6799
-
Phe
GAA
[ENA]
¢þ
>WENV180018791
FTAI01001709
[FTAI] metagenome; soil
6950
6874
-
Met
CAT
[ENA]
¢þ
>WENV180018780
FTAI01001479
[FTAI] metagenome; soil
7284
7209
-
Trp
CCA
[ENA]
¢þ
>WENV180018799
FTAI01001779
[FTAI] metagenome; soil
7968
8044
+
Pro
TGG
[ENA]
¢þ
>WENV180018771
FTAI01001257
[FTAI] metagenome; soil
8192
8281
+
Ser
CGA
[ENA]
¢þ
>WENV180018778
FTAI01001451
[FTAI] metagenome; soil
8363
8439
+
Asp
GTC
[ENA]
¢þ
>WENV180018800
FTAI01001779
[FTAI] metagenome; soil
8401
8477
+
Arg
TCT
[ENA]
¢þ
>WENV180018784
FTAI01001628
[FTAI] metagenome; soil
8655
8581
-
Glu
TTC
[ENA]
¢þ
>WENV180018803
FTAI01001793
[FTAI] metagenome; soil
9230
9156
-
Gly
CCC
[ENA]
¢þ
>WENV180018750
FTAI01000752
[FTAI] metagenome; soil
9653
9578
-
Phe
GAA
[ENA]
¢þ
>WENV180018772
FTAI01001312
[FTAI] metagenome; soil
9761
9677
-
Leu
CAA
[ENA]
¢þ
>WENV180018779
FTAI01001455
[FTAI] metagenome; soil
10126
10215
+
Ser
GGA
[ENA]
¢þ
>WENV180018730
FTAI01000301
[FTAI] metagenome; soil
10920
10995
+
Ala
GGC
[ENA]
¢þ
>WENV180018725
FTAI01000214
[FTAI] metagenome; soil
10943
10869
-
Gly
CCC
[ENA]
¢þ
>WENV180018775
FTAI01001377
[FTAI] metagenome; soil
10986
10910
-
Met
CAT
[ENA]
¢þ
>WENV180018721
FTAI01000082
[FTAI] metagenome; soil
11186
11111
-
Asn
GTT
[ENA]
¢þ
>WENV180018729
FTAI01000300
[FTAI] metagenome; soil
11710
11783
+
Gln
CTG
[ENA]
¢þ
>WENV180018724
FTAI01000213
[FTAI] metagenome; soil
12048
11973
-
Thr
TGT
[ENA]
¢þ
>WENV180018762
FTAI01001098
[FTAI] metagenome; soil
12412
12487
+
Thr
TGT
[ENA]
¢þ
>WENV180018727
FTAI01000250
[FTAI] metagenome; soil
14429
14354
-
Lys
CTT
[ENA]
¢þ
>WENV180018731
FTAI01000388
[FTAI] metagenome; soil
14855
14944
+
Ser
TGA
[ENA]
¢þ
>WENV180018788
FTAI01001661
[FTAI] metagenome; soil
14863
14955
+
Ser
GCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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