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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FTBA] metagenome; soil
HIT:
23 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180018891
FTBA01000105
[FTBA] metagenome; soil
275
203
-
Glu
TTC
[ENA]
¢þ
>WENV180018900
FTBA01000240
[FTBA] metagenome; soil
1264
1340
+
Asp
GTC
[ENA]
¢þ
>WENV180018884
FTBA01000015
[FTBA] metagenome; soil
1875
1801
-
Met
CAT
[ENA]
¢þ
>WENV180018896
FTBA01000190
[FTBA] metagenome; soil
1950
2021
+
Cys
GCA
[ENA]
¢þ
>WENV180018886
FTBA01000025
[FTBA] metagenome; soil
2548
2475
-
fMet
CAT
[ENA]
¢þ
>WENV180018898
FTBA01000207
[FTBA] metagenome; soil
2879
2952
+
Gln
TTG
[ENA]
¢þ
>WENV180018901
FTBA01000247
[FTBA] metagenome; soil
3175
3259
+
Leu
CAA
[ENA]
¢þ
>WENV180018889
FTBA01000104
[FTBA] metagenome; soil
3474
3398
-
Asn
GTT
[ENA]
¢þ
>WENV180018893
FTBA01000149
[FTBA] metagenome; soil
3610
3522
-
Ser
GGA
[ENA]
¢þ
>WENV180018899
FTBA01000224
[FTBA] metagenome; soil
5792
5720
-
Arg
CCG
[ENA]
¢þ
>WENV180018902
FTBA01000256
[FTBA] metagenome; soil
5910
5828
-
Leu
GAG
[ENA]
¢þ
>WENV180018887
FTBA01000059
[FTBA] metagenome; soil
6069
6142
+
Phe
GAA
[ENA]
¢þ
>WENV180018890
FTBA01000105
[FTBA] metagenome; soil
6369
6444
+
Lys
TTT
[ENA]
¢þ
>WENV180018895
FTBA01000177
[FTBA] metagenome; soil
6500
6582
+
Leu
TAG
[ENA]
¢þ
>WENV180018894
FTBA01000173
[FTBA] metagenome; soil
6740
6825
+
Ser
TGA
[ENA]
¢þ
>WENV180018888
FTBA01000071
[FTBA] metagenome; soil
6970
7044
+
Pro
GGG
[ENA]
¢þ
>WENV180018903
FTBA01000263
[FTBA] metagenome; soil
7591
7674
+
Tyr
GTA
[ENA]
¢þ
>WENV180018904
FTBA01000263
[FTBA] metagenome; soil
7737
7810
+
Gly
TCC
[ENA]
¢þ
>WENV180018905
FTBA01000263
[FTBA] metagenome; soil
7881
7953
+
Thr
GGT
[ENA]
¢þ
>WENV180018906
FTBA01000263
[FTBA] metagenome; soil
9368
9441
+
Trp
CCA
[ENA]
¢þ
>WENV180018885
FTBA01000021
[FTBA] metagenome; soil
11933
11860
-
Thr
TGT
[ENA]
¢þ
>WENV180018897
FTBA01000190
[FTBA] metagenome; soil
14728
14655
-
Cys
GCA
[ENA]
¢þ
>WENV180018892
FTBA01000148
[FTBA] metagenome; soil
19863
19937
+
Arg
TCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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