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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTBE] metagenome; soil
HIT:
37 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180018968
FTBE01000073
[FTBE] metagenome; soil
393
319
-
Arg
ACG
[ENA]
¢þ
>WENV180018957
FTBE01000045
[FTBE] metagenome; soil
1485
1557
+
Leu
TAA
[ENA]
¢þ
>WENV180018972
FTBE01000077
[FTBE] metagenome; soil
1576
1506
-
Cys
GCA
[ENA]
¢þ
>WENV180018949
FTBE01000010
[FTBE] metagenome; soil
1774
1691
-
Leu
CAG
[ENA]
¢þ
>WENV180018963
FTBE01000067
[FTBE] metagenome; soil
1790
1861
+
Val
CAC
[ENA]
¢þ
>WENV180018983
FTBE01000109
[FTBE] metagenome; soil
1841
1766
-
Pro
CGG
[ENA]
¢þ
>WENV180018948
FTBE01000010
[FTBE] metagenome; soil
1920
1993
+
Glu
CTC
[ENA]
¢þ
>WENV180018981
FTBE01000104
[FTBE] metagenome; soil
2471
2398
-
fMet
CAT
[ENA]
¢þ
>WENV180018959
FTBE01000048
[FTBE] metagenome; soil
3350
3275
-
Gln
CTG
[ENA]
¢þ
>WENV180018984
FTBE01000126
[FTBE] metagenome; soil
3389
3463
+
Asp
GTC
[ENA]
¢þ
>WENV180018962
FTBE01000063
[FTBE] metagenome; soil
3441
3533
+
Ser
CGA
[ENA]
¢þ
>WENV180018982
FTBE01000108
[FTBE] metagenome; soil
3518
3446
-
Thr
CGT
[ENA]
¢þ
>WENV180018960
FTBE01000049
[FTBE] metagenome; soil
4919
4845
-
Ile
GAT
[ENA]
¢þ
>WENV180018966
FTBE01000071
[FTBE] metagenome; soil
5388
5317
-
Trp
CCA
[ENA]
¢þ
>WENV180018980
FTBE01000104
[FTBE] metagenome; soil
5395
5307
-
Leu
TAA
[ENA]
¢þ
>WENV180018956
FTBE01000039
[FTBE] metagenome; soil
7511
7437
-
Met
CAT
[ENA]
¢þ
>WENV180018967
FTBE01000073
[FTBE] metagenome; soil
7512
7423
-
Ser
GGA
[ENA]
¢þ
>WENV180018979
FTBE01000103
[FTBE] metagenome; soil
8500
8573
+
Ala
GGC
[ENA]
¢þ
>WENV180018970
FTBE01000076
[FTBE] metagenome; soil
9204
9276
+
Lys
CTT
[ENA]
¢þ
>WENV180018950
FTBE01000011
[FTBE] metagenome; soil
9607
9535
-
Gly
CCC
[ENA]
¢þ
>WENV180018965
FTBE01000071
[FTBE] metagenome; soil
10033
9949
-
Leu
TAG
[ENA]
¢þ
>WENV180018951
FTBE01000017
[FTBE] metagenome; soil
10074
10147
+
Arg
CCG
[ENA]
¢þ
>WENV180018964
FTBE01000071
[FTBE] metagenome; soil
10629
10714
+
Leu
CAA
[ENA]
¢þ
>WENV180018953
FTBE01000029
[FTBE] metagenome; soil
11094
11175
+
Tyr
GTA
[ENA]
¢þ
>WENV180018952
FTBE01000028
[FTBE] metagenome; soil
16125
16052
-
Gly
GCC
[ENA]
¢þ
>WENV180018977
FTBE01000090
[FTBE] metagenome; soil
16357
16284
-
Ile2
CAT
[ENA]
¢þ
>WENV180018975
FTBE01000087
[FTBE] metagenome; soil
21093
21022
-
Lys
TTT
[ENA]
¢þ
>WENV180018976
FTBE01000090
[FTBE] metagenome; soil
21119
21046
-
Asn
GTT
[ENA]
¢þ
>WENV180018974
FTBE01000087
[FTBE] metagenome; soil
24360
24287
-
Val
TAC
[ENA]
¢þ
>WENV180018978
FTBE01000100
[FTBE] metagenome; soil
28584
28657
+
Pro
TGG
[ENA]
¢þ
>WENV180018955
FTBE01000034
[FTBE] metagenome; soil
32975
32901
-
His
GTG
[ENA]
¢þ
>WENV180018971
FTBE01000076
[FTBE] metagenome; soil
35544
35615
+
Arg
CCT
[ENA]
¢þ
>WENV180018969
FTBE01000075
[FTBE] metagenome; soil
37368
37439
+
Gln
TTG
[ENA]
¢þ
>WENV180018954
FTBE01000034
[FTBE] metagenome; soil
37783
37709
-
Arg
TCT
[ENA]
¢þ
>WENV180018973
FTBE01000082
[FTBE] metagenome; soil
47379
47452
+
Thr
TGT
[ENA]
¢þ
>WENV180018961
FTBE01000057
[FTBE] metagenome; soil
50904
50976
+
Phe
GAA
[ENA]
¢þ
>WENV180018958
FTBE01000046
[FTBE] metagenome; soil
52655
52582
-
Ala
CGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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