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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTBF] metagenome; soil
HIT:
54 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180019028
FTBF01000234
[FTBF] metagenome; soil
1
85
+
Leu
TAA
[ENA]
¢þ
>WENV180018996
FTBF01000081
[FTBF] metagenome; soil
5
80
+
Trp
CCA
[ENA]
¢þ
>WENV180019014
FTBF01000168
[FTBF] metagenome; soil
373
300
-
Ile
TAT
[ENA]
¢þ
>WENV180018999
FTBF01000114
[FTBF] metagenome; soil
1001
925
-
Cys
GCA
[ENA]
¢þ
>WENV180018989
FTBF01000033
[FTBF] metagenome; soil
1518
1593
+
Arg
TCT
[ENA]
¢þ
>WENV180019034
FTBF01000259
[FTBF] metagenome; soil
2108
2182
+
Val
CAC
[ENA]
¢þ
>WENV180019001
FTBF01000116
[FTBF] metagenome; soil
2420
2345
-
Ile2
CAT
[ENA]
¢þ
>WENV180019030
FTBF01000247
[FTBF] metagenome; soil
2527
2454
-
Gln
CTG
[ENA]
¢þ
>WENV180018998
FTBF01000093
[FTBF] metagenome; soil
2685
2599
-
Leu
CAA
[ENA]
¢þ
>WENV180018986
FTBF01000028
[FTBF] metagenome; soil
2825
2753
-
Lys
TTT
[ENA]
¢þ
>WENV180019031
FTBF01000251
[FTBF] metagenome; soil
2942
2866
-
Pro
CGG
[ENA]
¢þ
>WENV180019026
FTBF01000225
[FTBF] metagenome; soil
2981
3056
+
Trp
CCA
[ENA]
¢þ
>WENV180019027
FTBF01000230
[FTBF] metagenome; soil
3017
2941
-
Pro
TGG
[ENA]
¢þ
>WENV180019020
FTBF01000216
[FTBF] metagenome; soil
3442
3367
-
Arg
TCG
[ENA]
¢þ
>WENV180018992
FTBF01000058
[FTBF] metagenome; soil
4879
4970
+
Ser
GCT
[ENA]
¢þ
>WENV180019007
FTBF01000135
[FTBF] metagenome; soil
5669
5594
-
Arg
GCG
[ENA]
¢þ
>WENV180019012
FTBF01000163
[FTBF] metagenome; soil
5729
5654
-
Arg
CCG
[ENA]
¢þ
>WENV180019018
FTBF01000210
[FTBF] metagenome; soil
5976
6061
+
Tyr
GTA
[ENA]
¢þ
>WENV180019019
FTBF01000210
[FTBF] metagenome; soil
6080
6155
+
Pro
CGG
[ENA]
¢þ
>WENV180019037
FTBF01000264
[FTBF] metagenome; soil
6814
6739
-
Phe
GAA
[ENA]
¢þ
>WENV180019036
FTBF01000264
[FTBF] metagenome; soil
6896
6821
-
Asp
GTC
[ENA]
¢þ
>WENV180019003
FTBF01000124
[FTBF] metagenome; soil
7122
7048
-
Gln
CTG
[ENA]
¢þ
>WENV180019024
FTBF01000218
[FTBF] metagenome; soil
7387
7313
-
Thr
TGT
[ENA]
¢þ
>WENV180019017
FTBF01000204
[FTBF] metagenome; soil
7870
7795
-
Arg
CCT
[ENA]
¢þ
>WENV180018990
FTBF01000040
[FTBF] metagenome; soil
8806
8730
-
Met
CAT
[ENA]
¢þ
>WENV180019029
FTBF01000235
[FTBF] metagenome; soil
8860
8786
-
Val
TAC
[ENA]
¢þ
>WENV180019002
FTBF01000117
[FTBF] metagenome; soil
9334
9258
-
Ile
GAT
[ENA]
¢þ
>WENV180018988
FTBF01000032
[FTBF] metagenome; soil
9585
9660
+
Glu
CTC
[ENA]
¢þ
>WENV180019033
FTBF01000255
[FTBF] metagenome; soil
9788
9713
-
Lys
CTT
[ENA]
¢þ
>WENV180019005
FTBF01000132
[FTBF] metagenome; soil
10275
10348
+
Gly
TCC
[ENA]
¢þ
>WENV180019023
FTBF01000217
[FTBF] metagenome; soil
10296
10211
-
Leu
TAG
[ENA]
¢þ
>WENV180019006
FTBF01000132
[FTBF] metagenome; soil
10399
10473
+
Gly
CCC
[ENA]
¢þ
>WENV180018994
FTBF01000064
[FTBF] metagenome; soil
11411
11336
-
His
GTG
[ENA]
¢þ
>WENV180019016
FTBF01000200
[FTBF] metagenome; soil
12727
12803
+
fMet
CAT
[ENA]
¢þ
>WENV180019011
FTBF01000147
[FTBF] metagenome; soil
13577
13501
-
Arg
GCG
[ENA]
¢þ
>WENV180019010
FTBF01000147
[FTBF] metagenome; soil
13657
13581
-
Arg
TCG
[ENA]
¢þ
>WENV180019009
FTBF01000147
[FTBF] metagenome; soil
14075
13990
-
Leu
GAG
[ENA]
¢þ
>WENV180019008
FTBF01000147
[FTBF] metagenome; soil
14170
14095
-
Leu
CAG
[ENA]
¢þ
>WENV180019004
FTBF01000131
[FTBF] metagenome; soil
15023
14948
-
Ala
CGC
[ENA]
¢þ
>WENV180018995
FTBF01000066
[FTBF] metagenome; soil
15705
15792
+
Ser
CGA
[ENA]
¢þ
>WENV180018985
FTBF01000002
[FTBF] metagenome; soil
16051
15977
-
Thr
CGT
[ENA]
¢þ
>WENV180019038
FTBF01000269
[FTBF] metagenome; soil
16051
16127
+
Pro
GGG
[ENA]
¢þ
>WENV180019000
FTBF01000115
[FTBF] metagenome; soil
16824
16900
+
Cys
GCA
[ENA]
¢þ
>WENV180019022
FTBF01000217
[FTBF] metagenome; soil
18219
18145
-
Thr
GGT
[ENA]
¢þ
>WENV180018993
FTBF01000061
[FTBF] metagenome; soil
18225
18310
+
Leu
GAG
[ENA]
¢þ
>WENV180019021
FTBF01000217
[FTBF] metagenome; soil
18313
18229
-
Tyr
GTA
[ENA]
¢þ
>WENV180019035
FTBF01000260
[FTBF] metagenome; soil
19622
19697
+
Glu
TTC
[ENA]
¢þ
>WENV180019025
FTBF01000222
[FTBF] metagenome; soil
20951
21026
+
Ala
GGC
[ENA]
¢þ
>WENV180019015
FTBF01000171
[FTBF] metagenome; soil
21579
21664
+
Ser
TGA
[ENA]
¢þ
>WENV180019013
FTBF01000166
[FTBF] metagenome; soil
21675
21760
+
Leu
CAG
[ENA]
¢þ
>WENV180018991
FTBF01000056
[FTBF] metagenome; soil
21926
21851
-
Ala
TGC
[ENA]
¢þ
>WENV180018997
FTBF01000087
[FTBF] metagenome; soil
26512
26601
+
Ser
GCT
[ENA]
¢þ
>WENV180019032
FTBF01000252
[FTBF] metagenome; soil
50912
50839
-
Gln
TTG
[ENA]
¢þ
>WENV180018987
FTBF01000029
[FTBF] metagenome; soil
51326
51252
-
Val
GAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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