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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTBG] metagenome; soil
HIT:
54 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180019092
FTBG01000712
[FTBG] metagenome; soil
50
126
+
fMet
CAT
[ENA]
¢þ
>WENV180019073
FTBG01000463
[FTBG] metagenome; soil
90
18
-
Lys
TTT
[ENA]
¢þ
>WENV180019041
FTBG01000011
[FTBG] metagenome; soil
138
50
-
Leu
TAA
[ENA]
¢þ
>WENV180019080
FTBG01000538
[FTBG] metagenome; soil
196
122
-
Val
CAC
[ENA]
¢þ
>WENV180019042
FTBG01000026
[FTBG] metagenome; soil
196
279
+
Tyr
GTA
[ENA]
¢þ
>WENV180019084
FTBG01000582
[FTBG] metagenome; soil
494
566
+
Trp
CCA
[ENA]
¢þ
>WENV180019064
FTBG01000302
[FTBG] metagenome; soil
542
616
+
Asn
GTT
[ENA]
¢þ
>WENV180019043
FTBG01000075
[FTBG] metagenome; soil
891
966
+
Glu
CTC
[ENA]
¢þ
>WENV180019067
FTBG01000318
[FTBG] metagenome; soil
1056
1128
+
Thr
CGT
[ENA]
¢þ
>WENV180019074
FTBG01000475
[FTBG] metagenome; soil
1307
1397
+
Ser
GGA
[ENA]
¢þ
>WENV180019083
FTBG01000576
[FTBG] metagenome; soil
1731
1658
-
Arg
TCT
[ENA]
¢þ
>WENV180019077
FTBG01000507
[FTBG] metagenome; soil
1736
1663
-
Gln
CTG
[ENA]
¢þ
>WENV180019091
FTBG01000704
[FTBG] metagenome; soil
2166
2239
+
Ala
CGC
[ENA]
¢þ
>WENV180019045
FTBG01000098
[FTBG] metagenome; soil
2312
2225
-
Leu
TAA
[ENA]
¢þ
>WENV180019052
FTBG01000183
[FTBG] metagenome; soil
2555
2626
+
Gln
CTG
[ENA]
¢þ
>WENV180019039
FTBG01000002
[FTBG] metagenome; soil
3037
2950
-
Ser
TGA
[ENA]
¢þ
>WENV180019071
FTBG01000391
[FTBG] metagenome; soil
3206
3131
-
Gly
GCC
[ENA]
¢þ
>WENV180019069
FTBG01000343
[FTBG] metagenome; soil
3678
3751
+
Ile2
CAT
[ENA]
¢þ
>WENV180019088
FTBG01000629
[FTBG] metagenome; soil
3805
3879
+
Arg
ACG
[ENA]
¢þ
>WENV180019086
FTBG01000610
[FTBG] metagenome; soil
3913
3995
+
Leu
TAG
[ENA]
¢þ
>WENV180019082
FTBG01000563
[FTBG] metagenome; soil
3961
3870
-
Ser
CGA
[ENA]
¢þ
>WENV180019046
FTBG01000108
[FTBG] metagenome; soil
4010
3930
-
Leu
GAG
[ENA]
¢þ
>WENV180019051
FTBG01000175
[FTBG] metagenome; soil
4462
4537
+
Glu
TTC
[ENA]
¢þ
>WENV180019068
FTBG01000338
[FTBG] metagenome; soil
4463
4390
-
Gln
TTG
[ENA]
¢þ
>WENV180019063
FTBG01000279
[FTBG] metagenome; soil
5323
5398
+
Gly
GCC
[ENA]
¢þ
>WENV180019049
FTBG01000136
[FTBG] metagenome; soil
5776
5690
-
Leu
CAA
[ENA]
¢þ
>WENV180019062
FTBG01000267
[FTBG] metagenome; soil
5821
5745
-
fMet
CAT
[ENA]
¢þ
>WENV180019044
FTBG01000079
[FTBG] metagenome; soil
6253
6178
-
Ala
GGC
[ENA]
¢þ
>WENV180019040
FTBG01000008
[FTBG] metagenome; soil
6732
6803
+
Arg
CCT
[ENA]
¢þ
>WENV180019048
FTBG01000135
[FTBG] metagenome; soil
6961
6888
-
Thr
TGT
[ENA]
¢þ
>WENV180019047
FTBG01000114
[FTBG] metagenome; soil
8353
8278
-
Pro
TGG
[ENA]
¢þ
>WENV180019070
FTBG01000391
[FTBG] metagenome; soil
8635
8725
+
Ser
GGA
[ENA]
¢þ
>WENV180019055
FTBG01000224
[FTBG] metagenome; soil
9789
9718
-
Arg
CCT
[ENA]
¢þ
>WENV180019054
FTBG01000220
[FTBG] metagenome; soil
10335
10409
+
Cys
GCA
[ENA]
¢þ
>WENV180019075
FTBG01000478
[FTBG] metagenome; soil
10420
10501
+
Leu
TAG
[ENA]
¢þ
>WENV180019081
FTBG01000549
[FTBG] metagenome; soil
10698
10769
+
Gly
TCC
[ENA]
¢þ
>WENV180019076
FTBG01000497
[FTBG] metagenome; soil
11768
11692
-
Arg
ACG
[ENA]
¢þ
>WENV180019089
FTBG01000678
[FTBG] metagenome; soil
13081
13154
+
Gln
TTG
[ENA]
¢þ
>WENV180019065
FTBG01000308
[FTBG] metagenome; soil
13910
13982
+
Lys
TTT
[ENA]
¢þ
>WENV180019056
FTBG01000231
[FTBG] metagenome; soil
14364
14439
+
Thr
GGT
[ENA]
¢þ
>WENV180019085
FTBG01000604
[FTBG] metagenome; soil
14449
14374
-
Thr
TGT
[ENA]
¢þ
>WENV180019079
FTBG01000517
[FTBG] metagenome; soil
14664
14738
+
His
GTG
[ENA]
¢þ
>WENV180019072
FTBG01000450
[FTBG] metagenome; soil
15424
15350
-
Val
GAC
[ENA]
¢þ
>WENV180019057
FTBG01000249
[FTBG] metagenome; soil
15671
15744
+
Met
CAT
[ENA]
¢þ
>WENV180019087
FTBG01000627
[FTBG] metagenome; soil
16087
16016
-
Val
TAC
[ENA]
¢þ
>WENV180019078
FTBG01000511
[FTBG] metagenome; soil
16143
16072
-
Ile
TAT
[ENA]
¢þ
>WENV180019060
FTBG01000254
[FTBG] metagenome; soil
16218
16307
+
Ser
GGA
[ENA]
¢þ
>WENV180019053
FTBG01000184
[FTBG] metagenome; soil
17283
17357
+
Val
GAC
[ENA]
¢þ
>WENV180019058
FTBG01000249
[FTBG] metagenome; soil
17338
17412
+
Met
CAT
[ENA]
¢þ
>WENV180019059
FTBG01000252
[FTBG] metagenome; soil
21214
21290
+
Pro
CGG
[ENA]
¢þ
>WENV180019061
FTBG01000265
[FTBG] metagenome; soil
21606
21697
+
Ser
GCT
[ENA]
¢þ
>WENV180019050
FTBG01000161
[FTBG] metagenome; soil
22814
22733
-
Leu
GAG
[ENA]
¢þ
>WENV180019066
FTBG01000313
[FTBG] metagenome; soil
35677
35752
+
Thr
GGT
[ENA]
¢þ
>WENV180019090
FTBG01000686
[FTBG] metagenome; soil
37683
37609
-
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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