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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FTBH] metagenome; soil
HIT:
41 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180019131
FTBH01000273
[FTBH] metagenome; soil
76
2
-
Asn
GTT
[ENA]
¢þ
>WENV180019111
FTBH01000079
[FTBH] metagenome; soil
298
371
+
Gln
CTG
[ENA]
¢þ
>WENV180019120
FTBH01000140
[FTBH] metagenome; soil
358
281
-
Arg
ACG
[ENA]
¢þ
>WENV180019122
FTBH01000153
[FTBH] metagenome; soil
407
331
-
His
GTG
[ENA]
¢þ
>WENV180019109
FTBH01000059
[FTBH] metagenome; soil
489
563
+
Arg
CCT
[ENA]
¢þ
>WENV180019094
FTBH01000012
[FTBH] metagenome; soil
543
468
-
Ala
TGC
[ENA]
¢þ
>WENV180019105
FTBH01000050
[FTBH] metagenome; soil
950
1026
+
Gly
GCC
[ENA]
¢þ
>WENV180019133
FTBH01000277
[FTBH] metagenome; soil
1316
1232
-
Leu
TAG
[ENA]
¢þ
>WENV180019107
FTBH01000053
[FTBH] metagenome; soil
1489
1412
-
Pro
GGG
[ENA]
¢þ
>WENV180019115
FTBH01000118
[FTBH] metagenome; soil
2092
2017
-
Glu
TTC
[ENA]
¢þ
>WENV180019103
FTBH01000031
[FTBH] metagenome; soil
2798
2723
-
Lys
CTT
[ENA]
¢þ
>WENV180019093
FTBH01000009
[FTBH] metagenome; soil
3754
3829
+
Ala
CGC
[ENA]
¢þ
>WENV180019124
FTBH01000167
[FTBH] metagenome; soil
4476
4392
-
Leu
CAG
[ENA]
¢þ
>WENV180019127
FTBH01000202
[FTBH] metagenome; soil
4662
4586
-
Arg
TCG
[ENA]
¢þ
>WENV180019113
FTBH01000085
[FTBH] metagenome; soil
5364
5275
-
Ser
GCT
[ENA]
¢þ
>WENV180019108
FTBH01000056
[FTBH] metagenome; soil
5606
5694
+
Leu
TAA
[ENA]
¢þ
>WENV180019130
FTBH01000233
[FTBH] metagenome; soil
7253
7164
-
Ser
TGA
[ENA]
¢þ
>WENV180019128
FTBH01000203
[FTBH] metagenome; soil
7693
7617
-
Arg
CCG
[ENA]
¢þ
>WENV180019114
FTBH01000096
[FTBH] metagenome; soil
8948
9033
+
Leu
CAA
[ENA]
¢þ
>WENV180019106
FTBH01000052
[FTBH] metagenome; soil
10192
10103
-
Ser
CGA
[ENA]
¢þ
>WENV180019118
FTBH01000134
[FTBH] metagenome; soil
10971
10896
-
Lys
TTT
[ENA]
¢þ
>WENV180019125
FTBH01000173
[FTBH] metagenome; soil
11964
11889
-
Phe
GAA
[ENA]
¢þ
>WENV180019119
FTBH01000135
[FTBH] metagenome; soil
12284
12209
-
Ala
GGC
[ENA]
¢þ
>WENV180019112
FTBH01000081
[FTBH] metagenome; soil
12403
12478
+
Gln
TTG
[ENA]
¢þ
>WENV180019126
FTBH01000183
[FTBH] metagenome; soil
17149
17073
-
Arg
TCT
[ENA]
¢þ
>WENV180019129
FTBH01000216
[FTBH] metagenome; soil
20938
21012
+
Thr
CGT
[ENA]
¢þ
>WENV180019116
FTBH01000128
[FTBH] metagenome; soil
21617
21543
-
Val
GAC
[ENA]
¢þ
>WENV180019121
FTBH01000141
[FTBH] metagenome; soil
23828
23739
-
Ser
GGA
[ENA]
¢þ
>WENV180019096
FTBH01000020
[FTBH] metagenome; soil
26195
26272
+
Pro
TGG
[ENA]
¢þ
>WENV180019123
FTBH01000165
[FTBH] metagenome; soil
29515
29591
+
Met
CAT
[ENA]
¢þ
>WENV180019132
FTBH01000274
[FTBH] metagenome; soil
32024
32100
+
Met
CAT
[ENA]
¢þ
>WENV180019110
FTBH01000076
[FTBH] metagenome; soil
32481
32404
-
Pro
CGG
[ENA]
¢þ
>WENV180019104
FTBH01000036
[FTBH] metagenome; soil
36602
36686
+
Leu
GAG
[ENA]
¢þ
>WENV180019097
FTBH01000022
[FTBH] metagenome; soil
40717
40792
+
Thr
TGT
[ENA]
¢þ
>WENV180019098
FTBH01000022
[FTBH] metagenome; soil
40831
40916
+
Tyr
GTA
[ENA]
¢þ
>WENV180019099
FTBH01000022
[FTBH] metagenome; soil
40942
41018
+
Gly
TCC
[ENA]
¢þ
>WENV180019100
FTBH01000022
[FTBH] metagenome; soil
41128
41202
+
Thr
GGT
[ENA]
¢þ
>WENV180019095
FTBH01000018
[FTBH] metagenome; soil
41899
41823
-
Asp
GTC
[ENA]
¢þ
>WENV180019101
FTBH01000022
[FTBH] metagenome; soil
42760
42835
+
Trp
CCA
[ENA]
¢þ
>WENV180019117
FTBH01000131
[FTBH] metagenome; soil
42837
42913
+
Gly
CCC
[ENA]
¢þ
>WENV180019102
FTBH01000022
[FTBH] metagenome; soil
54730
54804
+
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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