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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTBI] metagenome; soil
HIT:
72 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180019180
FTBI01001346
[FTBI] metagenome; soil
5
99
+
SeC
TCA
[ENA]
¢þ
>WENV180019164
FTBI01001045
[FTBI] metagenome; soil
8
83
+
Glu
TTC
[ENA]
¢þ
>WENV180019154
FTBI01000629
[FTBI] metagenome; soil
11
84
+
Cys
GCA
[ENA]
¢þ
>WENV180019149
FTBI01000410
[FTBI] metagenome; soil
11
97
+
Leu
CAG
[ENA]
¢þ
>WENV180019159
FTBI01000752
[FTBI] metagenome; soil
21
97
+
fMet
CAT
[ENA]
¢þ
>WENV180019185
FTBI01001624
[FTBI] metagenome; soil
24
99
+
Glu
TTC
[ENA]
¢þ
>WENV180019152
FTBI01000578
[FTBI] metagenome; soil
75
-1
-
Gln
TTG
[ENA]
¢þ
>WENV180019203
FTBI01002198
[FTBI] metagenome; soil
101
26
-
Thr
CGT
[ENA]
¢þ
>WENV180019187
FTBI01001792
[FTBI] metagenome; soil
121
196
+
Phe
GAA
[ENA]
¢þ
>WENV180019186
FTBI01001624
[FTBI] metagenome; soil
181
257
+
Asp
GTC
[ENA]
¢þ
>WENV180019165
FTBI01001045
[FTBI] metagenome; soil
187
263
+
Asp
GTC
[ENA]
¢þ
>WENV180019204
FTBI01002199
[FTBI] metagenome; soil
210
126
-
Leu
CAG
[ENA]
¢þ
>WENV180019172
FTBI01001159
[FTBI] metagenome; soil
268
344
+
Pro
CGG
[ENA]
¢þ
>WENV180019144
FTBI01000203
[FTBI] metagenome; soil
301
226
-
Ala
CGC
[ENA]
¢þ
>WENV180019183
FTBI01001537
[FTBI] metagenome; soil
322
412
+
Ser
GGA
[ENA]
¢þ
>WENV180019177
FTBI01001265
[FTBI] metagenome; soil
583
658
+
Gly
GCC
[ENA]
¢þ
>WENV180019194
FTBI01001898
[FTBI] metagenome; soil
625
550
-
Thr
TGT
[ENA]
¢þ
>WENV180019178
FTBI01001265
[FTBI] metagenome; soil
774
847
+
Cys
GCA
[ENA]
¢þ
>WENV180019199
FTBI01002078
[FTBI] metagenome; soil
947
1024
+
Glu
TTC
[ENA]
¢þ
>WENV180019167
FTBI01001092
[FTBI] metagenome; soil
969
1045
+
Pro
GGG
[ENA]
¢þ
>WENV180019176
FTBI01001224
[FTBI] metagenome; soil
1092
1166
+
Thr
TGT
[ENA]
¢þ
>WENV180019148
FTBI01000303
[FTBI] metagenome; soil
1526
1601
+
Pro
CGG
[ENA]
¢þ
>WENV180019189
FTBI01001844
[FTBI] metagenome; soil
1860
1785
-
Ala
CGC
[ENA]
¢þ
>WENV180019134
FTBI01000006
[FTBI] metagenome; soil
2133
2060
-
Gln
CTG
[ENA]
¢þ
>WENV180019163
FTBI01001034
[FTBI] metagenome; soil
2379
2303
-
fMet
CAT
[ENA]
¢þ
>WENV180019169
FTBI01001116
[FTBI] metagenome; soil
2444
2532
+
Ser
CGA
[ENA]
¢þ
>WENV180019145
FTBI01000251
[FTBI] metagenome; soil
2527
2451
-
Glu
CTC
[ENA]
¢þ
>WENV180019198
FTBI01002011
[FTBI] metagenome; soil
2579
2655
+
Arg
TCT
[ENA]
¢þ
>WENV180019135
FTBI01000045
[FTBI] metagenome; soil
2589
2661
+
Ile2
CAT
[ENA]
¢þ
>WENV180019155
FTBI01000647
[FTBI] metagenome; soil
2608
2532
-
fMet
CAT
[ENA]
¢þ
>WENV180019158
FTBI01000676
[FTBI] metagenome; soil
2713
2640
-
Cys
GCA
[ENA]
¢þ
>WENV180019146
FTBI01000294
[FTBI] metagenome; soil
2787
2714
-
Cys
GCA
[ENA]
¢þ
>WENV180019157
FTBI01000676
[FTBI] metagenome; soil
2876
2801
-
Gly
GCC
[ENA]
¢þ
>WENV180019156
FTBI01000676
[FTBI] metagenome; soil
3021
2946
-
Gly
GCC
[ENA]
¢þ
>WENV180019153
FTBI01000628
[FTBI] metagenome; soil
3155
3080
-
Lys
TTT
[ENA]
¢þ
>WENV180019205
FTBI01002205
[FTBI] metagenome; soil
3460
3555
+
SeC
TCA
[ENA]
¢þ
>WENV180019174
FTBI01001188
[FTBI] metagenome; soil
3508
3435
-
Gln
CTG
[ENA]
¢þ
>WENV180019150
FTBI01000421
[FTBI] metagenome; soil
3542
3630
+
Leu
TAA
[ENA]
¢þ
>WENV180019200
FTBI01002101
[FTBI] metagenome; soil
3738
3809
+
Gly
CCC
[ENA]
¢þ
>WENV180019143
FTBI01000132
[FTBI] metagenome; soil
3852
3926
+
Asn
GTT
[ENA]
¢þ
>WENV180019147
FTBI01000299
[FTBI] metagenome; soil
4268
4192
-
Arg
CCG
[ENA]
¢þ
>WENV180019161
FTBI01000799
[FTBI] metagenome; soil
4420
4344
-
Asp
GTC
[ENA]
¢þ
>WENV180019151
FTBI01000543
[FTBI] metagenome; soil
4457
4532
+
fMet
CAT
[ENA]
¢þ
>WENV180019160
FTBI01000799
[FTBI] metagenome; soil
4502
4428
-
Val
TAC
[ENA]
¢þ
>WENV180019175
FTBI01001206
[FTBI] metagenome; soil
4671
4596
-
His
GTG
[ENA]
¢þ
>WENV180019136
FTBI01000054
[FTBI] metagenome; soil
5007
5083
+
fMet
CAT
[ENA]
¢þ
>WENV180019137
FTBI01000054
[FTBI] metagenome; soil
5257
5333
+
fMet
CAT
[ENA]
¢þ
>WENV180019188
FTBI01001801
[FTBI] metagenome; soil
5395
5471
+
Arg
TCT
[ENA]
¢þ
>WENV180019141
FTBI01000082
[FTBI] metagenome; soil
5874
5950
+
Val
TAC
[ENA]
¢þ
>WENV180019179
FTBI01001298
[FTBI] metagenome; soil
7056
6961
-
SeC
TCA
[ENA]
¢þ
>WENV180019195
FTBI01001967
[FTBI] metagenome; soil
7765
7689
-
Pro
TGG
[ENA]
¢þ
>WENV180019162
FTBI01000985
[FTBI] metagenome; soil
8479
8555
+
Pro
TGG
[ENA]
¢þ
>WENV180019140
FTBI01000069
[FTBI] metagenome; soil
9691
9766
+
Arg
CCG
[ENA]
¢þ
>WENV180019166
FTBI01001085
[FTBI] metagenome; soil
9873
9958
+
Leu
CAA
[ENA]
¢þ
>WENV180019197
FTBI01002000
[FTBI] metagenome; soil
9901
9985
+
Leu
GAG
[ENA]
¢þ
>WENV180019142
FTBI01000124
[FTBI] metagenome; soil
10791
10715
-
Met
CAT
[ENA]
¢þ
>WENV180019168
FTBI01001093
[FTBI] metagenome; soil
12937
12861
-
fMet
CAT
[ENA]
¢þ
>WENV180019182
FTBI01001448
[FTBI] metagenome; soil
13230
13157
-
Gly
CCC
[ENA]
¢þ
>WENV180019173
FTBI01001180
[FTBI] metagenome; soil
13526
13600
+
Gly
CCC
[ENA]
¢þ
>WENV180019181
FTBI01001422
[FTBI] metagenome; soil
16118
16042
-
Pro
GGG
[ENA]
¢þ
>WENV180019201
FTBI01002165
[FTBI] metagenome; soil
21808
21884
+
Met
CAT
[ENA]
¢þ
>WENV180019196
FTBI01001979
[FTBI] metagenome; soil
27057
26981
-
Pro
CGG
[ENA]
¢þ
>WENV180019184
FTBI01001621
[FTBI] metagenome; soil
29437
29513
+
Pro
TGG
[ENA]
¢þ
>WENV180019193
FTBI01001890
[FTBI] metagenome; soil
36429
36356
-
Cys
GCA
[ENA]
¢þ
>WENV180019192
FTBI01001890
[FTBI] metagenome; soil
36619
36544
-
Gly
GCC
[ENA]
¢þ
>WENV180019191
FTBI01001890
[FTBI] metagenome; soil
36763
36688
-
Gly
GCC
[ENA]
¢þ
>WENV180019202
FTBI01002173
[FTBI] metagenome; soil
41990
42064
+
Arg
CCT
[ENA]
¢þ
>WENV180019171
FTBI01001120
[FTBI] metagenome; soil
42385
42310
-
Phe
GAA
[ENA]
¢þ
>WENV180019170
FTBI01001120
[FTBI] metagenome; soil
61152
61227
+
Lys
CTT
[ENA]
¢þ
>WENV180019138
FTBI01000060
[FTBI] metagenome; soil
74796
74872
+
Val
GAC
[ENA]
¢þ
>WENV180019190
FTBI01001890
[FTBI] metagenome; soil
82274
82349
+
Asn
GTT
[ENA]
¢þ
>WENV180019139
FTBI01000060
[FTBI] metagenome; soil
83217
83293
+
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK