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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTBS] metagenome; soil
HIT:
30 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180019257
FTBS01000120
[FTBS] metagenome; soil
97
21
-
Arg
ACG
[ENA]
¢þ
>WENV180019278
FTBS01000610
[FTBS] metagenome; soil
115
190
+
Trp
CCA
[ENA]
¢þ
>WENV180019253
FTBS01000049
[FTBS] metagenome; soil
149
74
-
Phe
GAA
[ENA]
¢þ
>WENV180019254
FTBS01000064
[FTBS] metagenome; soil
303
378
+
Asn
GTT
[ENA]
¢þ
>WENV180019266
FTBS01000269
[FTBS] metagenome; soil
1084
1160
+
Arg
ACG
[ENA]
¢þ
>WENV180019258
FTBS01000136
[FTBS] metagenome; soil
1119
1193
+
Thr
GGT
[ENA]
¢þ
>WENV180019259
FTBS01000136
[FTBS] metagenome; soil
1197
1273
+
Asp
GTC
[ENA]
¢þ
>WENV180019251
FTBS01000023
[FTBS] metagenome; soil
1289
1200
-
Ser
TGA
[ENA]
¢þ
>WENV180019275
FTBS01000570
[FTBS] metagenome; soil
1528
1438
-
Ser
GGA
[ENA]
¢þ
>WENV180019264
FTBS01000244
[FTBS] metagenome; soil
1533
1608
+
Lys
CTT
[ENA]
¢þ
>WENV180019252
FTBS01000045
[FTBS] metagenome; soil
1557
1468
-
Ser
CGA
[ENA]
¢þ
>WENV180019271
FTBS01000310
[FTBS] metagenome; soil
1828
1736
-
Ser
GCT
[ENA]
¢þ
>WENV180019255
FTBS01000065
[FTBS] metagenome; soil
1893
1968
+
Ala
CGC
[ENA]
¢þ
>WENV180019279
FTBS01000644
[FTBS] metagenome; soil
2125
2049
-
fMet
CAT
[ENA]
¢þ
>WENV180019267
FTBS01000269
[FTBS] metagenome; soil
2239
2315
+
fMet
CAT
[ENA]
¢þ
>WENV180019280
FTBS01000673
[FTBS] metagenome; soil
2552
2462
-
Ser
GGA
[ENA]
¢þ
>WENV180019261
FTBS01000155
[FTBS] metagenome; soil
2741
2815
+
Val
CAC
[ENA]
¢þ
>WENV180019256
FTBS01000108
[FTBS] metagenome; soil
3228
3304
+
Pro
CGG
[ENA]
¢þ
>WENV180019265
FTBS01000244
[FTBS] metagenome; soil
4302
4377
+
Lys
CTT
[ENA]
¢þ
>WENV180019272
FTBS01000337
[FTBS] metagenome; soil
5090
5166
+
fMet
CAT
[ENA]
¢þ
>WENV180019276
FTBS01000585
[FTBS] metagenome; soil
5328
5244
-
Leu
CAG
[ENA]
¢þ
>WENV180019274
FTBS01000528
[FTBS] metagenome; soil
5912
5826
-
Leu
GAG
[ENA]
¢þ
>WENV180019260
FTBS01000141
[FTBS] metagenome; soil
10025
9949
-
Arg
ACG
[ENA]
¢þ
>WENV180019262
FTBS01000192
[FTBS] metagenome; soil
13777
13853
+
Arg
CCG
[ENA]
¢þ
>WENV180019277
FTBS01000587
[FTBS] metagenome; soil
23395
23470
+
Phe
GAA
[ENA]
¢þ
>WENV180019273
FTBS01000383
[FTBS] metagenome; soil
29609
29533
-
Arg
TCT
[ENA]
¢þ
>WENV180019263
FTBS01000195
[FTBS] metagenome; soil
36776
36703
-
Cys
GCA
[ENA]
¢þ
>WENV180019268
FTBS01000279
[FTBS] metagenome; soil
37922
38006
+
Tyr
GTA
[ENA]
¢þ
>WENV180019269
FTBS01000279
[FTBS] metagenome; soil
38055
38128
+
Gly
TCC
[ENA]
¢þ
>WENV180019270
FTBS01000279
[FTBS] metagenome; soil
38202
38276
+
Thr
GGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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