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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTBU] metagenome; soil
HIT:
83 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180019298
FTBU01000328
[FTBU] metagenome; soil
14
89
+
Pro
GGG
[ENA]
¢þ
>WENV180019336
FTBU01001436
[FTBU] metagenome; soil
35
122
+
Ser
GGA
[ENA]
¢þ
>WENV180019343
FTBU01001557
[FTBU] metagenome; soil
112
186
+
Leu
TAA
[ENA]
¢þ
>WENV180019317
FTBU01000868
[FTBU] metagenome; soil
126
53
-
Glu
CTC
[ENA]
¢þ
>WENV180019363
FTBU01001946
[FTBU] metagenome; soil
143
56
-
Ser
GGA
[ENA]
¢þ
>WENV180019349
FTBU01001706
[FTBU] metagenome; soil
152
79
-
Arg
CCT
[ENA]
¢þ
>WENV180019352
FTBU01001759
[FTBU] metagenome; soil
167
92
-
Gly
CCC
[ENA]
¢þ
>WENV180019316
FTBU01000868
[FTBU] metagenome; soil
254
182
-
Gln
CTG
[ENA]
¢þ
>WENV180019355
FTBU01001800
[FTBU] metagenome; soil
329
402
+
Thr
GGT
[ENA]
¢þ
>WENV180019332
FTBU01001376
[FTBU] metagenome; soil
339
255
-
Leu
GAG
[ENA]
¢þ
>WENV180019348
FTBU01001704
[FTBU] metagenome; soil
395
319
-
Pro
CGG
[ENA]
¢þ
>WENV180019356
FTBU01001800
[FTBU] metagenome; soil
437
513
+
Met
CAT
[ENA]
¢þ
>WENV180019331
FTBU01001376
[FTBU] metagenome; soil
468
382
-
Leu
CAG
[ENA]
¢þ
>WENV180019286
FTBU01000025
[FTBU] metagenome; soil
540
614
+
Lys
TTT
[ENA]
¢þ
>WENV180019285
FTBU01000024
[FTBU] metagenome; soil
602
527
-
Gly
CCC
[ENA]
¢þ
>WENV180019324
FTBU01000990
[FTBU] metagenome; soil
714
796
+
Tyr
GTA
[ENA]
¢þ
>WENV180019307
FTBU01000619
[FTBU] metagenome; soil
791
715
-
Asp
GTC
[ENA]
¢þ
>WENV180019354
FTBU01001796
[FTBU] metagenome; soil
796
724
-
Gly
CCC
[ENA]
¢þ
>WENV180019366
FTBU01002084
[FTBU] metagenome; soil
833
758
-
Pro
TGG
[ENA]
¢þ
>WENV180019314
FTBU01000825
[FTBU] metagenome; soil
834
907
+
Trp
CCA
[ENA]
¢þ
>WENV180019342
FTBU01001531
[FTBU] metagenome; soil
835
908
+
Val
CAC
[ENA]
¢þ
>WENV180019287
FTBU01000075
[FTBU] metagenome; soil
877
793
-
Leu
CAG
[ENA]
¢þ
>WENV180019325
FTBU01001024
[FTBU] metagenome; soil
890
961
+
Gln
TTG
[ENA]
¢þ
>WENV180019306
FTBU01000619
[FTBU] metagenome; soil
938
865
-
Glu
TTC
[ENA]
¢þ
>WENV180019290
FTBU01000173
[FTBU] metagenome; soil
991
917
-
Asp
GTC
[ENA]
¢þ
>WENV180019305
FTBU01000619
[FTBU] metagenome; soil
1042
1116
+
Phe
GAA
[ENA]
¢þ
>WENV180019367
FTBU01002117
[FTBU] metagenome; soil
1078
1004
-
Leu
TAG
[ENA]
¢þ
>WENV180019339
FTBU01001456
[FTBU] metagenome; soil
1084
1158
+
Lys
CTT
[ENA]
¢þ
>WENV180019340
FTBU01001462
[FTBU] metagenome; soil
1129
1053
-
fMet
CAT
[ENA]
¢þ
>WENV180019300
FTBU01000514
[FTBU] metagenome; soil
1135
1062
-
Trp
CCA
[ENA]
¢þ
>WENV180019289
FTBU01000173
[FTBU] metagenome; soil
1164
1091
-
Glu
TTC
[ENA]
¢þ
>WENV180019309
FTBU01000726
[FTBU] metagenome; soil
1205
1129
-
Arg
TCG
[ENA]
¢þ
>WENV180019299
FTBU01000484
[FTBU] metagenome; soil
1206
1131
-
Asn
GTT
[ENA]
¢þ
>WENV180019320
FTBU01000920
[FTBU] metagenome; soil
1392
1466
+
Ile
GAT
[ENA]
¢þ
>WENV180019345
FTBU01001572
[FTBU] metagenome; soil
1466
1393
-
Pro
TGG
[ENA]
¢þ
>WENV180019344
FTBU01001572
[FTBU] metagenome; soil
1575
1502
-
Gly
TCC
[ENA]
¢þ
>WENV180019359
FTBU01001922
[FTBU] metagenome; soil
1592
1677
+
Ser
TGA
[ENA]
¢þ
>WENV180019328
FTBU01001217
[FTBU] metagenome; soil
1609
1683
+
fMet
CAT
[ENA]
¢þ
>WENV180019353
FTBU01001771
[FTBU] metagenome; soil
1647
1563
-
Leu
CAA
[ENA]
¢þ
>WENV180019321
FTBU01000920
[FTBU] metagenome; soil
1649
1722
+
Ala
TGC
[ENA]
¢þ
>WENV180019358
FTBU01001898
[FTBU] metagenome; soil
1703
1629
-
Gln
CTG
[ENA]
¢þ
>WENV180019362
FTBU01001944
[FTBU] metagenome; soil
1741
1652
-
Ser
GCT
[ENA]
¢þ
>WENV180019311
FTBU01000819
[FTBU] metagenome; soil
1758
1832
+
Ile
GAT
[ENA]
¢þ
>WENV180019347
FTBU01001614
[FTBU] metagenome; soil
1767
1689
-
Pro
CGG
[ENA]
¢þ
>WENV180019315
FTBU01000831
[FTBU] metagenome; soil
1802
1875
+
Thr
TGT
[ENA]
¢þ
>WENV180019357
FTBU01001898
[FTBU] metagenome; soil
1817
1891
+
Gln
CTG
[ENA]
¢þ
>WENV180019323
FTBU01000940
[FTBU] metagenome; soil
1928
2003
+
Lys
CTT
[ENA]
¢þ
>WENV180019364
FTBU01001974
[FTBU] metagenome; soil
1951
2046
+
SeC
TCA
[ENA]
¢þ
>WENV180019312
FTBU01000819
[FTBU] metagenome; soil
2030
2104
+
Ala
TGC
[ENA]
¢þ
>WENV180019322
FTBU01000932
[FTBU] metagenome; soil
2130
2205
+
Gly
CCC
[ENA]
¢þ
>WENV180019351
FTBU01001741
[FTBU] metagenome; soil
2193
2118
-
Gly
TCC
[ENA]
¢þ
>WENV180019327
FTBU01001157
[FTBU] metagenome; soil
2334
2261
-
His
GTG
[ENA]
¢þ
>WENV180019350
FTBU01001716
[FTBU] metagenome; soil
2344
2420
+
Pro
CGG
[ENA]
¢þ
>WENV180019335
FTBU01001430
[FTBU] metagenome; soil
2415
2489
+
Arg
TCT
[ENA]
¢þ
>WENV180019337
FTBU01001440
[FTBU] metagenome; soil
2418
2507
+
Ser
CGA
[ENA]
¢þ
>WENV180019318
FTBU01000897
[FTBU] metagenome; soil
2600
2683
+
Leu
CAG
[ENA]
¢þ
>WENV180019313
FTBU01000824
[FTBU] metagenome; soil
2654
2581
-
Leu
CAA
[ENA]
¢þ
>WENV180019333
FTBU01001404
[FTBU] metagenome; soil
2715
2791
+
Arg
TCG
[ENA]
¢þ
>WENV180019360
FTBU01001922
[FTBU] metagenome; soil
2736
2827
+
Ser
GCT
[ENA]
¢þ
>WENV180019361
FTBU01001944
[FTBU] metagenome; soil
2778
2867
+
Ser
TGA
[ENA]
¢þ
>WENV180019334
FTBU01001420
[FTBU] metagenome; soil
2810
2886
+
Val
TAC
[ENA]
¢þ
>WENV180019288
FTBU01000091
[FTBU] metagenome; soil
2816
2739
-
Arg
CCG
[ENA]
¢þ
>WENV180019296
FTBU01000207
[FTBU] metagenome; soil
2830
2904
+
Thr
TGT
[ENA]
¢þ
>WENV180019308
FTBU01000656
[FTBU] metagenome; soil
2889
2967
+
Arg
TCT
[ENA]
¢þ
>WENV180019365
FTBU01002004
[FTBU] metagenome; soil
2993
2919
-
Leu
TAA
[ENA]
¢þ
>WENV180019303
FTBU01000525
[FTBU] metagenome; soil
3027
2953
-
Val
GAC
[ENA]
¢þ
>WENV180019319
FTBU01000905
[FTBU] metagenome; soil
3077
3002
-
Lys
CTT
[ENA]
¢þ
>WENV180019302
FTBU01000525
[FTBU] metagenome; soil
3129
3056
-
Cys
GCA
[ENA]
¢þ
>WENV180019341
FTBU01001518
[FTBU] metagenome; soil
3228
3303
+
Ile
TAT
[ENA]
¢þ
>WENV180019301
FTBU01000525
[FTBU] metagenome; soil
3233
3160
-
Gly
GCC
[ENA]
¢þ
>WENV180019346
FTBU01001604
[FTBU] metagenome; soil
3388
3312
-
Asp
GTC
[ENA]
¢þ
>WENV180019295
FTBU01000206
[FTBU] metagenome; soil
3632
3706
+
Val
TAC
[ENA]
¢þ
>WENV180019326
FTBU01001038
[FTBU] metagenome; soil
3705
3794
+
Ser
GGA
[ENA]
¢þ
>WENV180019293
FTBU01000205
[FTBU] metagenome; soil
3820
3892
+
Gln
CTG
[ENA]
¢þ
>WENV180019304
FTBU01000529
[FTBU] metagenome; soil
3890
3815
-
Ile
TAT
[ENA]
¢þ
>WENV180019294
FTBU01000205
[FTBU] metagenome; soil
3972
4047
+
Glu
CTC
[ENA]
¢þ
>WENV180019338
FTBU01001448
[FTBU] metagenome; soil
5182
5256
+
fMet
CAT
[ENA]
¢þ
>WENV180019330
FTBU01001371
[FTBU] metagenome; soil
5366
5442
+
Glu
TTC
[ENA]
¢þ
>WENV180019310
FTBU01000737
[FTBU] metagenome; soil
5667
5571
-
SeC
TCA
[ENA]
¢þ
>WENV180019291
FTBU01000174
[FTBU] metagenome; soil
5979
6052
+
Thr
GGT
[ENA]
¢þ
>WENV180019292
FTBU01000174
[FTBU] metagenome; soil
6106
6180
+
Met
CAT
[ENA]
¢þ
>WENV180019329
FTBU01001239
[FTBU] metagenome; soil
6188
6105
-
Leu
CAA
[ENA]
¢þ
>WENV180019297
FTBU01000300
[FTBU] metagenome; soil
9989
9901
-
Ser
GGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK