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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTBV] metagenome; soil
HIT:
87 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180019368
FTBV01000143
[FTBV] metagenome; soil
4
80
+
Asp
GTC
[ENA]
¢þ
>WENV180019379
FTBV01000387
[FTBV] metagenome; soil
14
89
+
Lys
CTT
[ENA]
¢þ
>WENV180019410
FTBV01001530
[FTBV] metagenome; soil
14
90
+
Val
GAC
[ENA]
¢þ
>WENV180019371
FTBV01000168
[FTBV] metagenome; soil
15
91
+
Asp
GTC
[ENA]
¢þ
>WENV180019397
FTBV01001147
[FTBV] metagenome; soil
19
94
+
Phe
GAA
[ENA]
¢þ
>WENV180019417
FTBV01002045
[FTBV] metagenome; soil
24
99
+
Asn
GTT
[ENA]
¢þ
>WENV180019439
FTBV01002369
[FTBV] metagenome; soil
39
114
+
His
GTG
[ENA]
¢þ
>WENV180019435
FTBV01002334
[FTBV] metagenome; soil
80
4
-
Arg
ACG
[ENA]
¢þ
>WENV180019450
FTBV01002630
[FTBV] metagenome; soil
95
22
-
Gly
CCC
[ENA]
¢þ
>WENV180019418
FTBV01002045
[FTBV] metagenome; soil
181
256
+
Asn
GTT
[ENA]
¢þ
>WENV180019436
FTBV01002354
[FTBV] metagenome; soil
192
276
+
Leu
CAA
[ENA]
¢þ
>WENV180019433
FTBV01002247
[FTBV] metagenome; soil
317
391
+
Val
CAC
[ENA]
¢þ
>WENV180019377
FTBV01000337
[FTBV] metagenome; soil
327
402
+
Thr
TGT
[ENA]
¢þ
>WENV180019398
FTBV01001202
[FTBV] metagenome; soil
398
474
+
fMet
CAT
[ENA]
¢þ
>WENV180019399
FTBV01001208
[FTBV] metagenome; soil
646
721
+
Phe
GAA
[ENA]
¢þ
>WENV180019385
FTBV01000513
[FTBV] metagenome; soil
816
744
-
Asn
GTT
[ENA]
¢þ
>WENV180019411
FTBV01001573
[FTBV] metagenome; soil
842
916
+
Arg
CCT
[ENA]
¢þ
>WENV180019381
FTBV01000492
[FTBV] metagenome; soil
853
780
-
Gly
CCC
[ENA]
¢þ
>WENV180019447
FTBV01002628
[FTBV] metagenome; soil
934
1009
+
Glu
TTC
[ENA]
¢þ
>WENV180019412
FTBV01001627
[FTBV] metagenome; soil
1080
993
-
Leu
TAA
[ENA]
¢þ
>WENV180019448
FTBV01002628
[FTBV] metagenome; soil
1105
1180
+
Asp
GTC
[ENA]
¢þ
>WENV180019449
FTBV01002628
[FTBV] metagenome; soil
1350
1425
+
His
GTG
[ENA]
¢þ
>WENV180019380
FTBV01000442
[FTBV] metagenome; soil
1495
1581
+
Ser
TGA
[ENA]
¢þ
>WENV180019408
FTBV01001352
[FTBV] metagenome; soil
1511
1587
+
Pro
TGG
[ENA]
¢þ
>WENV180019376
FTBV01000335
[FTBV] metagenome; soil
1684
1609
-
Pro
CGG
[ENA]
¢þ
>WENV180019416
FTBV01002034
[FTBV] metagenome; soil
2015
1939
-
Ile2
CAT
[ENA]
¢þ
>WENV180019373
FTBV01000169
[FTBV] metagenome; soil
2215
2139
-
Pro
TGG
[ENA]
¢þ
>WENV180019388
FTBV01000823
[FTBV] metagenome; soil
2329
2404
+
Asn
GTT
[ENA]
¢þ
>WENV180019414
FTBV01001805
[FTBV] metagenome; soil
2506
2430
-
fMet
CAT
[ENA]
¢þ
>WENV180019413
FTBV01001736
[FTBV] metagenome; soil
2544
2470
-
Thr
CGT
[ENA]
¢þ
>WENV180019403
FTBV01001279
[FTBV] metagenome; soil
2915
2991
+
Arg
ACG
[ENA]
¢þ
>WENV180019430
FTBV01002171
[FTBV] metagenome; soil
3036
3111
+
Thr
CGT
[ENA]
¢þ
>WENV180019384
FTBV01000501
[FTBV] metagenome; soil
3088
3015
-
Cys
GCA
[ENA]
¢þ
>WENV180019396
FTBV01001126
[FTBV] metagenome; soil
3108
3181
+
Gly
CCC
[ENA]
¢þ
>WENV180019422
FTBV01002087
[FTBV] metagenome; soil
3207
3291
+
Leu
GAG
[ENA]
¢þ
>WENV180019383
FTBV01000501
[FTBV] metagenome; soil
3250
3175
-
Gly
GCC
[ENA]
¢þ
>WENV180019393
FTBV01000904
[FTBV] metagenome; soil
3415
3491
+
Arg
CCG
[ENA]
¢þ
>WENV180019424
FTBV01002123
[FTBV] metagenome; soil
3524
3600
+
Met
CAT
[ENA]
¢þ
>WENV180019415
FTBV01001861
[FTBV] metagenome; soil
3843
3751
-
SeC
TCA
[ENA]
¢þ
>WENV180019387
FTBV01000797
[FTBV] metagenome; soil
4092
4016
-
Met
CAT
[ENA]
¢þ
>WENV180019382
FTBV01000493
[FTBV] metagenome; soil
4459
4372
-
Leu
TAA
[ENA]
¢þ
>WENV180019378
FTBV01000359
[FTBV] metagenome; soil
4743
4659
-
Leu
CAA
[ENA]
¢þ
>WENV180019437
FTBV01002358
[FTBV] metagenome; soil
5052
4976
-
Val
GAC
[ENA]
¢þ
>WENV180019404
FTBV01001337
[FTBV] metagenome; soil
5921
5997
+
fMet
CAT
[ENA]
¢þ
>WENV180019440
FTBV01002378
[FTBV] metagenome; soil
7022
7098
+
Pro
GGG
[ENA]
¢þ
>WENV180019372
FTBV01000169
[FTBV] metagenome; soil
7414
7338
-
Arg
TCT
[ENA]
¢þ
>WENV180019395
FTBV01001024
[FTBV] metagenome; soil
7722
7646
-
Met
CAT
[ENA]
¢þ
>WENV180019402
FTBV01001223
[FTBV] metagenome; soil
8129
8042
-
Leu
TAA
[ENA]
¢þ
>WENV180019392
FTBV01000899
[FTBV] metagenome; soil
8544
8468
-
Met
CAT
[ENA]
¢þ
>WENV180019407
FTBV01001340
[FTBV] metagenome; soil
9557
9482
-
Ser
TGA
[ENA]
¢þ
>WENV180019406
FTBV01001340
[FTBV] metagenome; soil
9642
9567
-
Asn
GTT
[ENA]
¢þ
>WENV180019405
FTBV01001340
[FTBV] metagenome; soil
9727
9649
-
Arg
ACG
[ENA]
¢þ
>WENV180019429
FTBV01002167
[FTBV] metagenome; soil
10606
10516
-
Leu
TAA
[ENA]
¢þ
>WENV180019434
FTBV01002261
[FTBV] metagenome; soil
11705
11780
+
Ala
CGC
[ENA]
¢þ
>WENV180019425
FTBV01002140
[FTBV] metagenome; soil
12370
12445
+
Phe
GAA
[ENA]
¢þ
>WENV180019401
FTBV01001223
[FTBV] metagenome; soil
13457
13382
-
Gly
GCC
[ENA]
¢þ
>WENV180019400
FTBV01001223
[FTBV] metagenome; soil
13538
13465
-
Cys
GCA
[ENA]
¢þ
>WENV180019428
FTBV01002167
[FTBV] metagenome; soil
14540
14467
-
Cys
GCA
[ENA]
¢þ
>WENV180019427
FTBV01002167
[FTBV] metagenome; soil
14707
14632
-
Gly
GCC
[ENA]
¢þ
>WENV180019420
FTBV01002052
[FTBV] metagenome; soil
15884
15809
-
His
GTG
[ENA]
¢þ
>WENV180019419
FTBV01002052
[FTBV] metagenome; soil
18103
18028
-
Val
TAC
[ENA]
¢þ
>WENV180019370
FTBV01000145
[FTBV] metagenome; soil
19941
19865
-
Gln
TTG
[ENA]
¢þ
>WENV180019443
FTBV01002402
[FTBV] metagenome; soil
20894
20970
+
Arg
CCG
[ENA]
¢þ
>WENV180019426
FTBV01002167
[FTBV] metagenome; soil
20991
20905
-
Leu
TAG
[ENA]
¢þ
>WENV180019394
FTBV01001022
[FTBV] metagenome; soil
21208
21292
+
Leu
CAG
[ENA]
¢þ
>WENV180019409
FTBV01001510
[FTBV] metagenome; soil
21746
21670
-
Pro
GGG
[ENA]
¢þ
>WENV180019374
FTBV01000207
[FTBV] metagenome; soil
22319
22403
+
Leu
CAA
[ENA]
¢þ
>WENV180019432
FTBV01002231
[FTBV] metagenome; soil
22986
22910
-
Pro
TGG
[ENA]
¢þ
>WENV180019386
FTBV01000734
[FTBV] metagenome; soil
23452
23378
-
Val
CAC
[ENA]
¢þ
>WENV180019423
FTBV01002118
[FTBV] metagenome; soil
24709
24633
-
Pro
CGG
[ENA]
¢þ
>WENV180019442
FTBV01002387
[FTBV] metagenome; soil
26803
26714
-
Ser
GGA
[ENA]
¢þ
>WENV180019441
FTBV01002378
[FTBV] metagenome; soil
27101
27026
-
Asn
GTT
[ENA]
¢þ
>WENV180019431
FTBV01002231
[FTBV] metagenome; soil
27481
27405
-
Arg
TCT
[ENA]
¢þ
>WENV180019446
FTBV01002576
[FTBV] metagenome; soil
30786
30873
+
Ser
TGA
[ENA]
¢þ
>WENV180019445
FTBV01002463
[FTBV] metagenome; soil
31307
31232
-
Lys
CTT
[ENA]
¢þ
>WENV180019444
FTBV01002463
[FTBV] metagenome; soil
31429
31354
-
Lys
TTT
[ENA]
¢þ
>WENV180019369
FTBV01000145
[FTBV] metagenome; soil
35184
35260
+
Ile2
CAT
[ENA]
¢þ
>WENV180019421
FTBV01002074
[FTBV] metagenome; soil
40604
40679
+
Thr
TGT
[ENA]
¢þ
>WENV180019451
FTBV01002646
[FTBV] metagenome; soil
49593
49666
+
Gly
CCC
[ENA]
¢þ
>WENV180019389
FTBV01000851
[FTBV] metagenome; soil
53584
53669
+
Tyr
GTA
[ENA]
¢þ
>WENV180019390
FTBV01000851
[FTBV] metagenome; soil
53731
53804
+
Gly
TCC
[ENA]
¢þ
>WENV180019391
FTBV01000851
[FTBV] metagenome; soil
53904
53978
+
Thr
GGT
[ENA]
¢þ
>WENV180019438
FTBV01002364
[FTBV] metagenome; soil
62618
62705
+
Ser
CGA
[ENA]
¢þ
>WENV180019375
FTBV01000212
[FTBV] metagenome; soil
74680
74588
-
Ser
GCT
[ENA]
¢þ
>WENV180019454
FTBV01002646
[FTBV] metagenome; soil
116192
116116
-
Asp
GTC
[ENA]
¢þ
>WENV180019453
FTBV01002646
[FTBV] metagenome; soil
116337
116262
-
Glu
TTC
[ENA]
¢þ
>WENV180019452
FTBV01002646
[FTBV] metagenome; soil
116449
116374
-
Ala
GGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK