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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTCB] metagenome; soil
HIT:
61 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180019501
FTCB01000537
[FTCB] metagenome; soil
9
81
+
Lys
TTT
[ENA]
¢þ
>WENV180019494
FTCB01000399
[FTCB] metagenome; soil
120
45
-
Lys
CTT
[ENA]
¢þ
>WENV180019473
FTCB01000072
[FTCB] metagenome; soil
394
323
-
Gln
CTG
[ENA]
¢þ
>WENV180019526
FTCB01000897
[FTCB] metagenome; soil
455
366
-
Ser
CGA
[ENA]
¢þ
>WENV180019509
FTCB01000676
[FTCB] metagenome; soil
457
532
+
Gly
GCC
[ENA]
¢þ
>WENV180019481
FTCB01000189
[FTCB] metagenome; soil
707
634
-
Ala
CGC
[ENA]
¢þ
>WENV180019489
FTCB01000299
[FTCB] metagenome; soil
724
650
-
Val
CAC
[ENA]
¢þ
>WENV180019472
FTCB01000057
[FTCB] metagenome; soil
787
862
+
Thr
TGT
[ENA]
¢þ
>WENV180019480
FTCB01000189
[FTCB] metagenome; soil
838
911
+
Gly
GCC
[ENA]
¢þ
>WENV180019482
FTCB01000193
[FTCB] metagenome; soil
926
1009
+
Leu
CAA
[ENA]
¢þ
>WENV180019515
FTCB01000788
[FTCB] metagenome; soil
942
859
-
Tyr
GTA
[ENA]
¢þ
>WENV180019485
FTCB01000248
[FTCB] metagenome; soil
1565
1641
+
Asp
GTC
[ENA]
¢þ
>WENV180019513
FTCB01000770
[FTCB] metagenome; soil
1945
2026
+
Leu
CAA
[ENA]
¢þ
>WENV180019495
FTCB01000408
[FTCB] metagenome; soil
1988
2073
+
Leu
TAA
[ENA]
¢þ
>WENV180019530
FTCB01000946
[FTCB] metagenome; soil
2392
2306
-
Leu
TAA
[ENA]
¢þ
>WENV180019507
FTCB01000660
[FTCB] metagenome; soil
3005
3076
+
Gly
TCC
[ENA]
¢þ
>WENV180019488
FTCB01000291
[FTCB] metagenome; soil
3038
2964
-
Asn
GTT
[ENA]
¢þ
>WENV180019493
FTCB01000391
[FTCB] metagenome; soil
3319
3245
-
Val
GAC
[ENA]
¢þ
>WENV180019524
FTCB01000895
[FTCB] metagenome; soil
3372
3301
-
Gly
TCC
[ENA]
¢þ
>WENV180019497
FTCB01000438
[FTCB] metagenome; soil
3849
3758
-
Ser
CGA
[ENA]
¢þ
>WENV180019478
FTCB01000165
[FTCB] metagenome; soil
4570
4644
+
fMet
CAT
[ENA]
¢þ
>WENV180019499
FTCB01000490
[FTCB] metagenome; soil
4709
4782
+
Gly
CCC
[ENA]
¢þ
>WENV180019490
FTCB01000329
[FTCB] metagenome; soil
5087
5161
+
Arg
CCT
[ENA]
¢þ
>WENV180019514
FTCB01000782
[FTCB] metagenome; soil
6280
6354
+
Met
CAT
[ENA]
¢þ
>WENV180019487
FTCB01000266
[FTCB] metagenome; soil
6844
6917
+
Cys
GCA
[ENA]
¢þ
>WENV180019523
FTCB01000886
[FTCB] metagenome; soil
6910
6836
-
Met
CAT
[ENA]
¢þ
>WENV180019491
FTCB01000331
[FTCB] metagenome; soil
6914
6842
-
Lys
TTT
[ENA]
¢þ
>WENV180019506
FTCB01000654
[FTCB] metagenome; soil
6956
6882
-
Arg
ACG
[ENA]
¢þ
>WENV180019529
FTCB01000946
[FTCB] metagenome; soil
7920
7831
-
Ser
GGA
[ENA]
¢þ
>WENV180019474
FTCB01000108
[FTCB] metagenome; soil
8003
8087
+
Leu
GAG
[ENA]
¢þ
>WENV180019504
FTCB01000627
[FTCB] metagenome; soil
8372
8446
+
His
GTG
[ENA]
¢þ
>WENV180019531
FTCB01000950
[FTCB] metagenome; soil
9470
9396
-
Asn
GTT
[ENA]
¢þ
>WENV180019519
FTCB01000821
[FTCB] metagenome; soil
9474
9383
-
Ser
GCT
[ENA]
¢þ
>WENV180019505
FTCB01000649
[FTCB] metagenome; soil
10370
10445
+
Glu
TTC
[ENA]
¢þ
>WENV180019475
FTCB01000109
[FTCB] metagenome; soil
10883
10810
-
Ile2
CAT
[ENA]
¢þ
>WENV180019508
FTCB01000662
[FTCB] metagenome; soil
10979
11053
+
Lys
CTT
[ENA]
¢þ
>WENV180019484
FTCB01000223
[FTCB] metagenome; soil
11451
11378
-
Pro
GGG
[ENA]
¢þ
>WENV180019520
FTCB01000840
[FTCB] metagenome; soil
11967
11883
-
Leu
CAG
[ENA]
¢þ
>WENV180019516
FTCB01000792
[FTCB] metagenome; soil
14310
14382
+
Gly
CCC
[ENA]
¢þ
>WENV180019502
FTCB01000613
[FTCB] metagenome; soil
14676
14749
+
Ala
GGC
[ENA]
¢þ
>WENV180019486
FTCB01000251
[FTCB] metagenome; soil
14689
14597
-
Ser
GCT
[ENA]
¢þ
>WENV180019525
FTCB01000897
[FTCB] metagenome; soil
16105
16033
-
Val
TAC
[ENA]
¢þ
>WENV180019496
FTCB01000426
[FTCB] metagenome; soil
16493
16420
-
Pro
TGG
[ENA]
¢þ
>WENV180019479
FTCB01000175
[FTCB] metagenome; soil
16730
16658
-
Arg
CCT
[ENA]
¢þ
>WENV180019528
FTCB01000942
[FTCB] metagenome; soil
16851
16926
+
Glu
CTC
[ENA]
¢þ
>WENV180019521
FTCB01000859
[FTCB] metagenome; soil
20074
20146
+
Lys
TTT
[ENA]
¢þ
>WENV180019532
FTCB01000989
[FTCB] metagenome; soil
20077
20003
-
Val
CAC
[ENA]
¢þ
>WENV180019476
FTCB01000120
[FTCB] metagenome; soil
20712
20785
+
Gly
CCC
[ENA]
¢þ
>WENV180019498
FTCB01000460
[FTCB] metagenome; soil
20727
20801
+
Thr
CGT
[ENA]
¢þ
>WENV180019512
FTCB01000749
[FTCB] metagenome; soil
22296
22370
+
Thr
CGT
[ENA]
¢þ
>WENV180019527
FTCB01000904
[FTCB] metagenome; soil
24668
24752
+
Leu
CAG
[ENA]
¢þ
>WENV180019503
FTCB01000618
[FTCB] metagenome; soil
25496
25572
+
Arg
CCG
[ENA]
¢þ
>WENV180019477
FTCB01000144
[FTCB] metagenome; soil
28113
28042
-
Val
CAC
[ENA]
¢þ
>WENV180019483
FTCB01000223
[FTCB] metagenome; soil
29426
29335
-
Ser
CGA
[ENA]
¢þ
>WENV180019522
FTCB01000859
[FTCB] metagenome; soil
30758
30832
+
fMet
CAT
[ENA]
¢þ
>WENV180019492
FTCB01000376
[FTCB] metagenome; soil
32751
32822
+
Gln
TTG
[ENA]
¢þ
>WENV180019517
FTCB01000797
[FTCB] metagenome; soil
38447
38523
+
Arg
ACG
[ENA]
¢þ
>WENV180019518
FTCB01000797
[FTCB] metagenome; soil
43360
43434
+
Arg
ACG
[ENA]
¢þ
>WENV180019500
FTCB01000516
[FTCB] metagenome; soil
47964
48036
+
Thr
CGT
[ENA]
¢þ
>WENV180019511
FTCB01000735
[FTCB] metagenome; soil
50047
49967
-
Leu
GAG
[ENA]
¢þ
>WENV180019510
FTCB01000700
[FTCB] metagenome; soil
54779
54853
+
Cys
GCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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