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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FTCC] metagenome; soil
HIT:
42 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180019565
FTCC01000872
[FTCC] metagenome; soil
81
9
-
Arg
CCG
[ENA]
¢þ
>WENV180019533
FTCC01000020
[FTCC] metagenome; soil
123
50
-
Ile2
CAT
[ENA]
¢þ
>WENV180019559
FTCC01000598
[FTCC] metagenome; soil
497
423
-
Ile2
CAT
[ENA]
¢þ
>WENV180019570
FTCC01000936
[FTCC] metagenome; soil
847
923
+
Pro
GGG
[ENA]
¢þ
>WENV180019547
FTCC01000260
[FTCC] metagenome; soil
987
903
-
Leu
TAG
[ENA]
¢þ
>WENV180019560
FTCC01000606
[FTCC] metagenome; soil
1285
1360
+
Ala
GGC
[ENA]
¢þ
>WENV180019552
FTCC01000405
[FTCC] metagenome; soil
1332
1407
+
Phe
GAA
[ENA]
¢þ
>WENV180019537
FTCC01000082
[FTCC] metagenome; soil
1633
1560
-
Arg
TCT
[ENA]
¢þ
>WENV180019539
FTCC01000117
[FTCC] metagenome; soil
1727
1655
-
Arg
CCT
[ENA]
¢þ
>WENV180019542
FTCC01000155
[FTCC] metagenome; soil
1827
1901
+
Asn
GTT
[ENA]
¢þ
>WENV180019538
FTCC01000108
[FTCC] metagenome; soil
2041
2131
+
Ser
GCT
[ENA]
¢þ
>WENV180019541
FTCC01000150
[FTCC] metagenome; soil
2173
2097
-
Pro
TGG
[ENA]
¢þ
>WENV180019558
FTCC01000569
[FTCC] metagenome; soil
2222
2294
+
Val
GAC
[ENA]
¢þ
>WENV180019555
FTCC01000466
[FTCC] metagenome; soil
2316
2227
-
Ser
CGA
[ENA]
¢þ
>WENV180019551
FTCC01000394
[FTCC] metagenome; soil
2458
2383
-
fMet
CAT
[ENA]
¢þ
>WENV180019540
FTCC01000122
[FTCC] metagenome; soil
2937
2865
-
Arg
CCG
[ENA]
¢þ
>WENV180019550
FTCC01000388
[FTCC] metagenome; soil
3611
3537
-
Glu
TTC
[ENA]
¢þ
>WENV180019573
FTCC01000979
[FTCC] metagenome; soil
3708
3784
+
Pro
CGG
[ENA]
¢þ
>WENV180019574
FTCC01000980
[FTCC] metagenome; soil
3944
3854
-
Ser
GGA
[ENA]
¢þ
>WENV180019536
FTCC01000046
[FTCC] metagenome; soil
4133
4044
-
Ser
CGA
[ENA]
¢þ
>WENV180019557
FTCC01000545
[FTCC] metagenome; soil
4670
4743
+
Gly
TCC
[ENA]
¢þ
>WENV180019569
FTCC01000897
[FTCC] metagenome; soil
5076
5003
-
Gln
CTG
[ENA]
¢þ
>WENV180019568
FTCC01000897
[FTCC] metagenome; soil
5187
5116
-
Gln
TTG
[ENA]
¢þ
>WENV180019545
FTCC01000205
[FTCC] metagenome; soil
5362
5434
+
Arg
CCT
[ENA]
¢þ
>WENV180019554
FTCC01000449
[FTCC] metagenome; soil
5532
5460
-
Ile2
CAT
[ENA]
¢þ
>WENV180019572
FTCC01000954
[FTCC] metagenome; soil
6237
6327
+
Arg
GCG
[ENA]
¢þ
>WENV180019546
FTCC01000226
[FTCC] metagenome; soil
6586
6513
-
Gly
TCC
[ENA]
¢þ
>WENV180019543
FTCC01000161
[FTCC] metagenome; soil
7011
7084
+
Gly
TCC
[ENA]
¢þ
>WENV180019535
FTCC01000038
[FTCC] metagenome; soil
8547
8458
-
Ser
GGA
[ENA]
¢þ
>WENV180019567
FTCC01000893
[FTCC] metagenome; soil
8551
8475
-
Pro
CGG
[ENA]
¢þ
>WENV180019534
FTCC01000038
[FTCC] metagenome; soil
8743
8817
+
Cys
GCA
[ENA]
¢þ
>WENV180019544
FTCC01000193
[FTCC] metagenome; soil
8908
8983
+
Asp
GTC
[ENA]
¢þ
>WENV180019566
FTCC01000883
[FTCC] metagenome; soil
10492
10418
-
Asn
GTT
[ENA]
¢þ
>WENV180019563
FTCC01000855
[FTCC] metagenome; soil
11046
11119
+
Gln
TTG
[ENA]
¢þ
>WENV180019564
FTCC01000855
[FTCC] metagenome; soil
11150
11222
+
Gln
CTG
[ENA]
¢þ
>WENV180019548
FTCC01000316
[FTCC] metagenome; soil
11617
11543
-
Val
CAC
[ENA]
¢þ
>WENV180019553
FTCC01000431
[FTCC] metagenome; soil
12044
11970
-
Gly
GCC
[ENA]
¢þ
>WENV180019556
FTCC01000497
[FTCC] metagenome; soil
13156
13080
-
Arg
ACG
[ENA]
¢þ
>WENV180019562
FTCC01000756
[FTCC] metagenome; soil
14230
14316
+
Leu
TAA
[ENA]
¢þ
>WENV180019549
FTCC01000367
[FTCC] metagenome; soil
17117
17043
-
His
GTG
[ENA]
¢þ
>WENV180019561
FTCC01000647
[FTCC] metagenome; soil
20782
20710
-
Met
CAT
[ENA]
¢þ
>WENV180019571
FTCC01000953
[FTCC] metagenome; soil
22213
22142
-
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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