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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FTCD] metagenome; soil
HIT:
42 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180019607
FTCD01000598
[FTCD] metagenome; soil
79
4
-
His
GTG
[ENA]
¢þ
>WENV180019582
FTCD01000197
[FTCD] metagenome; soil
87
176
+
Ser
TGA
[ENA]
¢þ
>WENV180019602
FTCD01000527
[FTCD] metagenome; soil
647
721
+
Val
CAC
[ENA]
¢þ
>WENV180019580
FTCD01000119
[FTCD] metagenome; soil
952
1028
+
Pro
TGG
[ENA]
¢þ
>WENV180019584
FTCD01000240
[FTCD] metagenome; soil
1095
1190
+
SeC
TCA
[ENA]
¢þ
>WENV180019603
FTCD01000529
[FTCD] metagenome; soil
1311
1384
+
Gly
CCC
[ENA]
¢þ
>WENV180019587
FTCD01000376
[FTCD] metagenome; soil
1484
1400
-
Leu
CAG
[ENA]
¢þ
>WENV180019581
FTCD01000119
[FTCD] metagenome; soil
1539
1615
+
Arg
TCT
[ENA]
¢þ
>WENV180019606
FTCD01000598
[FTCD] metagenome; soil
2213
2138
-
Val
TAC
[ENA]
¢þ
>WENV180019591
FTCD01000422
[FTCD] metagenome; soil
2231
2144
-
Leu
TAA
[ENA]
¢þ
>WENV180019590
FTCD01000422
[FTCD] metagenome; soil
3215
3140
-
Gly
GCC
[ENA]
¢þ
>WENV180019589
FTCD01000422
[FTCD] metagenome; soil
3323
3250
-
Cys
GCA
[ENA]
¢þ
>WENV180019583
FTCD01000211
[FTCD] metagenome; soil
3364
3288
-
Met
CAT
[ENA]
¢þ
>WENV180019588
FTCD01000389
[FTCD] metagenome; soil
3769
3685
-
Leu
CAA
[ENA]
¢þ
>WENV180019592
FTCD01000431
[FTCD] metagenome; soil
4824
4748
-
Ile2
CAT
[ENA]
¢þ
>WENV180019577
FTCD01000024
[FTCD] metagenome; soil
4995
4919
-
Asp
GTC
[ENA]
¢þ
>WENV180019576
FTCD01000024
[FTCD] metagenome; soil
5121
5046
-
Glu
TTC
[ENA]
¢þ
>WENV180019575
FTCD01000024
[FTCD] metagenome; soil
5226
5151
-
Ala
GGC
[ENA]
¢þ
>WENV180019614
FTCD01000719
[FTCD] metagenome; soil
5976
6051
+
Phe
GAA
[ENA]
¢þ
>WENV180019609
FTCD01000654
[FTCD] metagenome; soil
6404
6329
-
Arg
CCG
[ENA]
¢þ
>WENV180019616
FTCD01000721
[FTCD] metagenome; soil
11570
11494
-
Arg
ACG
[ENA]
¢þ
>WENV180019595
FTCD01000477
[FTCD] metagenome; soil
12749
12825
+
Val
GAC
[ENA]
¢þ
>WENV180019586
FTCD01000363
[FTCD] metagenome; soil
16338
16262
-
Pro
GGG
[ENA]
¢þ
>WENV180019597
FTCD01000491
[FTCD] metagenome; soil
16892
16820
-
Lys
TTT
[ENA]
¢þ
>WENV180019579
FTCD01000083
[FTCD] metagenome; soil
20162
20087
-
His
GTG
[ENA]
¢þ
>WENV180019578
FTCD01000083
[FTCD] metagenome; soil
22285
22210
-
Val
TAC
[ENA]
¢þ
>WENV180019604
FTCD01000548
[FTCD] metagenome; soil
22426
22510
+
Leu
CAG
[ENA]
¢þ
>WENV180019605
FTCD01000548
[FTCD] metagenome; soil
22523
22597
+
Gln
TTG
[ENA]
¢þ
>WENV180019608
FTCD01000630
[FTCD] metagenome; soil
32910
32835
-
Phe
GAA
[ENA]
¢þ
>WENV180019593
FTCD01000474
[FTCD] metagenome; soil
34849
34765
-
Leu
CAG
[ENA]
¢þ
>WENV180019611
FTCD01000698
[FTCD] metagenome; soil
36923
36849
-
Val
CAC
[ENA]
¢þ
>WENV180019610
FTCD01000698
[FTCD] metagenome; soil
37035
36961
-
Val
CAC
[ENA]
¢þ
>WENV180019594
FTCD01000475
[FTCD] metagenome; soil
48149
48225
+
Arg
TCT
[ENA]
¢þ
>WENV180019598
FTCD01000526
[FTCD] metagenome; soil
57720
57809
+
Ser
TGA
[ENA]
¢þ
>WENV180019613
FTCD01000718
[FTCD] metagenome; soil
65743
65667
-
Ile2
CAT
[ENA]
¢þ
>WENV180019612
FTCD01000718
[FTCD] metagenome; soil
82263
82339
+
Gln
TTG
[ENA]
¢þ
>WENV180019599
FTCD01000526
[FTCD] metagenome; soil
101456
101530
+
Arg
CCT
[ENA]
¢þ
>WENV180019615
FTCD01000721
[FTCD] metagenome; soil
105621
105526
-
SeC
TCA
[ENA]
¢þ
>WENV180019585
FTCD01000363
[FTCD] metagenome; soil
107826
107751
-
Thr
CGT
[ENA]
¢þ
>WENV180019596
FTCD01000477
[FTCD] metagenome; soil
120752
120844
+
Ser
GCT
[ENA]
¢þ
>WENV180019601
FTCD01000526
[FTCD] metagenome; soil
146496
146421
-
Lys
CTT
[ENA]
¢þ
>WENV180019600
FTCD01000526
[FTCD] metagenome; soil
146649
146574
-
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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