This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTCF] metagenome; soil
HIT:
55 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180019651
FTCF01000280
[FTCF] metagenome; soil
13
88
+
Lys
CTT
[ENA]
¢þ
>WENV180019643
FTCF01000170
[FTCF] metagenome; soil
81
6
-
Lys
CTT
[ENA]
¢þ
>WENV180019625
FTCF01000045
[FTCF] metagenome; soil
95
183
+
Ser
GCT
[ENA]
¢þ
>WENV180019631
FTCF01000058
[FTCF] metagenome; soil
99
25
-
Val
GAC
[ENA]
¢þ
>WENV180019660
FTCF01000427
[FTCF] metagenome; soil
105
179
+
Thr
TGT
[ENA]
¢þ
>WENV180019652
FTCF01000280
[FTCF] metagenome; soil
159
234
+
Lys
CTT
[ENA]
¢þ
>WENV180019630
FTCF01000058
[FTCF] metagenome; soil
211
140
-
Cys
GCA
[ENA]
¢þ
>WENV180019673
FTCF01000530
[FTCF] metagenome; soil
238
165
-
Asn
GTT
[ENA]
¢þ
>WENV180019629
FTCF01000058
[FTCF] metagenome; soil
339
266
-
Gly
GCC
[ENA]
¢þ
>WENV180019638
FTCF01000140
[FTCF] metagenome; soil
421
338
-
Leu
GAG
[ENA]
¢þ
>WENV180019644
FTCF01000200
[FTCF] metagenome; soil
600
510
-
Ser
TGA
[ENA]
¢þ
>WENV180019628
FTCF01000058
[FTCF] metagenome; soil
600
674
+
Val
CAC
[ENA]
¢þ
>WENV180019672
FTCF01000512
[FTCF] metagenome; soil
1020
1109
+
Ser
TGA
[ENA]
¢þ
>WENV180019668
FTCF01000494
[FTCF] metagenome; soil
1100
1173
+
Gly
CCC
[ENA]
¢þ
>WENV180019657
FTCF01000413
[FTCF] metagenome; soil
1470
1543
+
Trp
CCA
[ENA]
¢þ
>WENV180019653
FTCF01000280
[FTCF] metagenome; soil
1535
1618
+
Leu
TAG
[ENA]
¢þ
>WENV180019656
FTCF01000406
[FTCF] metagenome; soil
1557
1630
+
Thr
CGT
[ENA]
¢þ
>WENV180019646
FTCF01000229
[FTCF] metagenome; soil
1925
2019
+
SeC
TCA
[ENA]
¢þ
>WENV180019661
FTCF01000430
[FTCF] metagenome; soil
1947
1872
-
Ala
GGC
[ENA]
¢þ
>WENV180019623
FTCF01000028
[FTCF] metagenome; soil
2228
2153
-
Ile2
CAT
[ENA]
¢þ
>WENV180019636
FTCF01000121
[FTCF] metagenome; soil
2500
2427
-
Arg
TCT
[ENA]
¢þ
>WENV180019665
FTCF01000475
[FTCF] metagenome; soil
2508
2597
+
Ser
CGA
[ENA]
¢þ
>WENV180019667
FTCF01000479
[FTCF] metagenome; soil
2749
2831
+
Leu
CAA
[ENA]
¢þ
>WENV180019620
FTCF01000023
[FTCF] metagenome; soil
3204
3131
-
His
GTG
[ENA]
¢þ
>WENV180019621
FTCF01000026
[FTCF] metagenome; soil
3478
3554
+
Pro
CGG
[ENA]
¢þ
>WENV180019632
FTCF01000079
[FTCF] metagenome; soil
3715
3640
-
Gly
GCC
[ENA]
¢þ
>WENV180019658
FTCF01000423
[FTCF] metagenome; soil
3879
3952
+
Glu
TTC
[ENA]
¢þ
>WENV180019647
FTCF01000232
[FTCF] metagenome; soil
4008
4080
+
Gln
CTG
[ENA]
¢þ
>WENV180019659
FTCF01000423
[FTCF] metagenome; soil
4052
4126
+
Asp
GTC
[ENA]
¢þ
>WENV180019655
FTCF01000318
[FTCF] metagenome; soil
4093
4019
-
Gln
TTG
[ENA]
¢þ
>WENV180019648
FTCF01000232
[FTCF] metagenome; soil
4241
4314
+
Glu
CTC
[ENA]
¢þ
>WENV180019619
FTCF01000014
[FTCF] metagenome; soil
4242
4166
-
fMet
CAT
[ENA]
¢þ
>WENV180019671
FTCF01000507
[FTCF] metagenome; soil
4472
4397
-
Ala
GGC
[ENA]
¢þ
>WENV180019670
FTCF01000507
[FTCF] metagenome; soil
4562
4476
-
Leu
CAG
[ENA]
¢þ
>WENV180019654
FTCF01000313
[FTCF] metagenome; soil
5138
5063
-
Lys
TTT
[ENA]
¢þ
>WENV180019666
FTCF01000476
[FTCF] metagenome; soil
5647
5720
+
Ala
CGC
[ENA]
¢þ
>WENV180019650
FTCF01000248
[FTCF] metagenome; soil
6023
5948
-
Ala
TGC
[ENA]
¢þ
>WENV180019649
FTCF01000248
[FTCF] metagenome; soil
6343
6269
-
Ile
GAT
[ENA]
¢þ
>WENV180019633
FTCF01000088
[FTCF] metagenome; soil
6473
6400
-
Ala
GGC
[ENA]
¢þ
>WENV180019642
FTCF01000169
[FTCF] metagenome; soil
7087
7013
-
Leu
TAA
[ENA]
¢þ
>WENV180019640
FTCF01000150
[FTCF] metagenome; soil
7701
7775
+
Val
GAC
[ENA]
¢þ
>WENV180019634
FTCF01000099
[FTCF] metagenome; soil
7952
7879
-
Arg
CCG
[ENA]
¢þ
>WENV180019622
FTCF01000028
[FTCF] metagenome; soil
8361
8288
-
Asn
GTT
[ENA]
¢þ
>WENV180019627
FTCF01000056
[FTCF] metagenome; soil
9413
9340
-
Gly
TCC
[ENA]
¢þ
>WENV180019626
FTCF01000056
[FTCF] metagenome; soil
9567
9642
+
Pro
TGG
[ENA]
¢þ
>WENV180019662
FTCF01000433
[FTCF] metagenome; soil
9667
9739
+
Gln
TTG
[ENA]
¢þ
>WENV180019637
FTCF01000130
[FTCF] metagenome; soil
9936
9854
-
Tyr
GTA
[ENA]
¢þ
>WENV180019663
FTCF01000468
[FTCF] metagenome; soil
10456
10529
+
Arg
CCT
[ENA]
¢þ
>WENV180019624
FTCF01000035
[FTCF] metagenome; soil
11202
11277
+
Pro
GGG
[ENA]
¢þ
>WENV180019664
FTCF01000470
[FTCF] metagenome; soil
11925
11999
+
fMet
CAT
[ENA]
¢þ
>WENV180019645
FTCF01000220
[FTCF] metagenome; soil
12225
12300
+
Ala
GGC
[ENA]
¢þ
>WENV180019639
FTCF01000146
[FTCF] metagenome; soil
12258
12332
+
Lys
TTT
[ENA]
¢þ
>WENV180019641
FTCF01000150
[FTCF] metagenome; soil
13138
13212
+
Val
GAC
[ENA]
¢þ
>WENV180019635
FTCF01000100
[FTCF] metagenome; soil
17207
17290
+
Leu
CAG
[ENA]
¢þ
>WENV180019669
FTCF01000500
[FTCF] metagenome; soil
30397
30321
-
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK