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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FTCH] metagenome; soil
HIT:
25 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180019686
FTCH01000130
[FTCH] metagenome; soil
6
80
+
Asn
GTT
[ENA]
¢þ
>WENV180019691
FTCH01000167
[FTCH] metagenome; soil
15
91
+
Pro
GGG
[ENA]
¢þ
>WENV180019685
FTCH01000121
[FTCH] metagenome; soil
20
94
+
Thr
GGT
[ENA]
¢þ
>WENV180019702
FTCH01000308
[FTCH] metagenome; soil
66
141
+
Thr
TGT
[ENA]
¢þ
>WENV180019695
FTCH01000201
[FTCH] metagenome; soil
78
3
-
Glu
TTC
[ENA]
¢þ
>WENV180019697
FTCH01000228
[FTCH] metagenome; soil
97
21
-
Asp
GTC
[ENA]
¢þ
>WENV180019699
FTCH01000261
[FTCH] metagenome; soil
205
121
-
Leu
CAA
[ENA]
¢þ
>WENV180019698
FTCH01000230
[FTCH] metagenome; soil
229
305
+
Ile2
CAT
[ENA]
¢þ
>WENV180019692
FTCH01000175
[FTCH] metagenome; soil
978
1052
+
Gln
TTG
[ENA]
¢þ
>WENV180019678
FTCH01000033
[FTCH] metagenome; soil
1549
1624
+
Ala
CGC
[ENA]
¢þ
>WENV180019679
FTCH01000043
[FTCH] metagenome; soil
1747
1833
+
Leu
GAG
[ENA]
¢þ
>WENV180019681
FTCH01000078
[FTCH] metagenome; soil
2078
2003
-
Lys
TTT
[ENA]
¢þ
>WENV180019690
FTCH01000155
[FTCH] metagenome; soil
2147
2221
+
Val
CAC
[ENA]
¢þ
>WENV180019693
FTCH01000197
[FTCH] metagenome; soil
2762
2838
+
Arg
CCG
[ENA]
¢þ
>WENV180019680
FTCH01000077
[FTCH] metagenome; soil
3582
3509
-
Gly
CCC
[ENA]
¢þ
>WENV180019687
FTCH01000131
[FTCH] metagenome; soil
3694
3604
-
Ser
GGA
[ENA]
¢þ
>WENV180019694
FTCH01000200
[FTCH] metagenome; soil
4585
4512
-
Gly
TCC
[ENA]
¢þ
>WENV180019696
FTCH01000206
[FTCH] metagenome; soil
5716
5641
-
Glu
TTC
[ENA]
¢þ
>WENV180019701
FTCH01000296
[FTCH] metagenome; soil
6053
5978
-
Ala
CGC
[ENA]
¢þ
>WENV180019688
FTCH01000137
[FTCH] metagenome; soil
7644
7570
-
Gly
GCC
[ENA]
¢þ
>WENV180019682
FTCH01000105
[FTCH] metagenome; soil
7911
7835
-
Pro
CGG
[ENA]
¢þ
>WENV180019700
FTCH01000276
[FTCH] metagenome; soil
8724
8808
+
Leu
TAG
[ENA]
¢þ
>WENV180019684
FTCH01000111
[FTCH] metagenome; soil
14150
14074
-
Pro
TGG
[ENA]
¢þ
>WENV180019683
FTCH01000111
[FTCH] metagenome; soil
14375
14451
+
Pro
TGG
[ENA]
¢þ
>WENV180019689
FTCH01000138
[FTCH] metagenome; soil
14817
14742
-
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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