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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTCK] metagenome; soil
HIT:
17 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180019710
FTCK01000008
[FTCK] metagenome; soil
7
97
+
Ser
GGA
[ENA]
¢þ
>WENV180019712
FTCK01000070
[FTCK] metagenome; soil
10
97
+
Ser
CGA
[ENA]
¢þ
>WENV180019714
FTCK01000096
[FTCK] metagenome; soil
11
98
+
Ser
CGA
[ENA]
¢þ
>WENV180019713
FTCK01000077
[FTCK] metagenome; soil
261
337
+
Ile2
CAT
[ENA]
¢þ
>WENV180019722
FTCK01000331
[FTCK] metagenome; soil
376
451
+
Thr
TGT
[ENA]
¢þ
>WENV180019718
FTCK01000129
[FTCK] metagenome; soil
509
584
+
Phe
GAA
[ENA]
¢þ
>WENV180019717
FTCK01000127
[FTCK] metagenome; soil
619
695
+
Pro
GGG
[ENA]
¢þ
>WENV180019726
FTCK01000435
[FTCK] metagenome; soil
1639
1714
+
Phe
GAA
[ENA]
¢þ
>WENV180019715
FTCK01000099
[FTCK] metagenome; soil
2414
2339
-
Ala
CGC
[ENA]
¢þ
>WENV180019711
FTCK01000043
[FTCK] metagenome; soil
3088
3013
-
Ala
CGC
[ENA]
¢þ
>WENV180019720
FTCK01000164
[FTCK] metagenome; soil
3361
3279
-
Leu
TAG
[ENA]
¢þ
>WENV180019721
FTCK01000261
[FTCK] metagenome; soil
3887
3811
-
Met
CAT
[ENA]
¢þ
>WENV180019725
FTCK01000419
[FTCK] metagenome; soil
5926
5851
-
Thr
CGT
[ENA]
¢þ
>WENV180019723
FTCK01000368
[FTCK] metagenome; soil
8400
8474
+
Ile2
CAT
[ENA]
¢þ
>WENV180019716
FTCK01000101
[FTCK] metagenome; soil
11006
10931
-
Lys
CTT
[ENA]
¢þ
>WENV180019719
FTCK01000160
[FTCK] metagenome; soil
21224
21148
-
Arg
TCT
[ENA]
¢þ
>WENV180019724
FTCK01000387
[FTCK] metagenome; soil
99797
99721
-
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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