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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FTCM] metagenome; soil
HIT:
41 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180019759
FTCM01000067
[FTCM] metagenome; soil
11
85
+
Gly
GCC
[ENA]
¢þ
>WENV180019765
FTCM01000081
[FTCM] metagenome; soil
11
95
+
Leu
GAG
[ENA]
¢þ
>WENV180019748
FTCM01000047
[FTCM] metagenome; soil
77
2
-
Phe
GAA
[ENA]
¢þ
>WENV180019755
FTCM01000057
[FTCM] metagenome; soil
79
5
-
Thr
GGT
[ENA]
¢þ
>WENV180019737
FTCM01000029
[FTCM] metagenome; soil
85
11
-
Gly
GCC
[ENA]
¢þ
>WENV180019738
FTCM01000031
[FTCM] metagenome; soil
521
597
+
Val
TAC
[ENA]
¢þ
>WENV180019739
FTCM01000031
[FTCM] metagenome; soil
613
689
+
Asp
GTC
[ENA]
¢þ
>WENV180019763
FTCM01000076
[FTCM] metagenome; soil
1512
1436
-
Pro
GGG
[ENA]
¢þ
>WENV180019733
FTCM01000021
[FTCM] metagenome; soil
2322
2396
+
Asn
GTT
[ENA]
¢þ
>WENV180019746
FTCM01000043
[FTCM] metagenome; soil
2352
2277
-
Ala
GGC
[ENA]
¢þ
>WENV180019735
FTCM01000023
[FTCM] metagenome; soil
2389
2480
+
Ser
GCT
[ENA]
¢þ
>WENV180019740
FTCM01000032
[FTCM] metagenome; soil
2803
2876
+
Gly
TCC
[ENA]
¢þ
>WENV180019741
FTCM01000032
[FTCM] metagenome; soil
2926
3001
+
Trp
CCA
[ENA]
¢þ
>WENV180019747
FTCM01000046
[FTCM] metagenome; soil
3677
3759
+
Leu
GAG
[ENA]
¢þ
>WENV180019742
FTCM01000038
[FTCM] metagenome; soil
4296
4371
+
Ile2
CAT
[ENA]
¢þ
>WENV180019758
FTCM01000063
[FTCM] metagenome; soil
5788
5712
-
Arg
CCG
[ENA]
¢þ
>WENV180019756
FTCM01000058
[FTCM] metagenome; soil
6563
6488
-
Ala
TGC
[ENA]
¢þ
>WENV180019734
FTCM01000022
[FTCM] metagenome; soil
6941
6868
-
Gly
CCC
[ENA]
¢þ
>WENV180019752
FTCM01000054
[FTCM] metagenome; soil
7500
7426
-
Met
CAT
[ENA]
¢þ
>WENV180019750
FTCM01000050
[FTCM] metagenome; soil
7637
7551
-
Leu
TAA
[ENA]
¢þ
>WENV180019760
FTCM01000075
[FTCM] metagenome; soil
8301
8212
-
Ser
GGA
[ENA]
¢þ
>WENV180019743
FTCM01000038
[FTCM] metagenome; soil
8514
8428
-
Leu
CAA
[ENA]
¢þ
>WENV180019762
FTCM01000076
[FTCM] metagenome; soil
8527
8451
-
Pro
CGG
[ENA]
¢þ
>WENV180019731
FTCM01000011
[FTCM] metagenome; soil
9190
9266
+
Arg
TCT
[ENA]
¢þ
>WENV180019761
FTCM01000076
[FTCM] metagenome; soil
9450
9374
-
Pro
TGG
[ENA]
¢þ
>WENV180019729
FTCM01000003
[FTCM] metagenome; soil
9996
9920
-
fMet
CAT
[ENA]
¢þ
>WENV180019728
FTCM01000003
[FTCM] metagenome; soil
12983
12894
-
Ser
CGA
[ENA]
¢þ
>WENV180019768
FTCM01000117
[FTCM] metagenome; soil
13082
13008
-
Thr
TGT
[ENA]
¢þ
>WENV180019745
FTCM01000039
[FTCM] metagenome; soil
14511
14422
-
Ser
TGA
[ENA]
¢þ
>WENV180019744
FTCM01000039
[FTCM] metagenome; soil
15407
15491
+
Leu
CAG
[ENA]
¢þ
>WENV180019767
FTCM01000113
[FTCM] metagenome; soil
17445
17521
+
His
GTG
[ENA]
¢þ
>WENV180019736
FTCM01000025
[FTCM] metagenome; soil
17526
17442
-
Leu
TAG
[ENA]
¢þ
>WENV180019749
FTCM01000048
[FTCM] metagenome; soil
20762
20688
-
Glu
TTC
[ENA]
¢þ
>WENV180019766
FTCM01000097
[FTCM] metagenome; soil
21365
21289
-
Arg
CCT
[ENA]
¢þ
>WENV180019730
FTCM01000006
[FTCM] metagenome; soil
21612
21688
+
Val
GAC
[ENA]
¢þ
>WENV180019732
FTCM01000012
[FTCM] metagenome; soil
23529
23604
+
Lys
TTT
[ENA]
¢þ
>WENV180019764
FTCM01000077
[FTCM] metagenome; soil
25355
25430
+
Ala
CGC
[ENA]
¢þ
>WENV180019757
FTCM01000060
[FTCM] metagenome; soil
33231
33157
-
Cys
GCA
[ENA]
¢þ
>WENV180019753
FTCM01000055
[FTCM] metagenome; soil
33858
33934
+
Arg
ACG
[ENA]
¢þ
>WENV180019754
FTCM01000055
[FTCM] metagenome; soil
42095
42180
+
Tyr
GTA
[ENA]
¢þ
>WENV180019751
FTCM01000053
[FTCM] metagenome; soil
43105
43029
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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