This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTCO] metagenome; soil
HIT:
61 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180019773
FTCO01000007
[FTCO] metagenome; soil
5
79
+
Trp
CCA
[ENA]
¢þ
>WENV180019780
FTCO01000293
[FTCO] metagenome; soil
6
81
+
Lys
TTT
[ENA]
¢þ
>WENV180019809
FTCO01001564
[FTCO] metagenome; soil
18
103
+
Leu
CAG
[ENA]
¢þ
>WENV180019784
FTCO01000402
[FTCO] metagenome; soil
24
100
+
Arg
ACG
[ENA]
¢þ
>WENV180019782
FTCO01000367
[FTCO] metagenome; soil
31
105
+
Ala
CGC
[ENA]
¢þ
>WENV180019781
FTCO01000321
[FTCO] metagenome; soil
44
116
+
Gln
TTG
[ENA]
¢þ
>WENV180019832
FTCO01001674
[FTCO] metagenome; soil
66
140
+
Arg
CCG
[ENA]
¢þ
>WENV180019778
FTCO01000191
[FTCO] metagenome; soil
76
1
-
Arg
ACG
[ENA]
¢þ
>WENV180019833
FTCO01001707
[FTCO] metagenome; soil
132
208
+
Pro
GGG
[ENA]
¢þ
>WENV180019804
FTCO01001081
[FTCO] metagenome; soil
417
491
+
Pro
TGG
[ENA]
¢þ
>WENV180019792
FTCO01000565
[FTCO] metagenome; soil
621
696
+
His
GTG
[ENA]
¢þ
>WENV180019774
FTCO01000059
[FTCO] metagenome; soil
670
747
+
Asn
GTT
[ENA]
¢þ
>WENV180019786
FTCO01000470
[FTCO] metagenome; soil
699
773
+
Ile2
CAT
[ENA]
¢þ
>WENV180019801
FTCO01000947
[FTCO] metagenome; soil
856
779
-
Glu
TTC
[ENA]
¢þ
>WENV180019793
FTCO01000617
[FTCO] metagenome; soil
1082
1171
+
Ser
TGA
[ENA]
¢þ
>WENV180019803
FTCO01001069
[FTCO] metagenome; soil
1440
1366
-
Met
CAT
[ENA]
¢þ
>WENV180019789
FTCO01000492
[FTCO] metagenome; soil
1467
1539
+
Val
TAC
[ENA]
¢þ
>WENV180019790
FTCO01000492
[FTCO] metagenome; soil
1658
1732
+
Asp
GTC
[ENA]
¢þ
>WENV180019810
FTCO01001586
[FTCO] metagenome; soil
1753
1841
+
Ser
CGA
[ENA]
¢þ
>WENV180019791
FTCO01000504
[FTCO] metagenome; soil
1779
1852
+
Val
GAC
[ENA]
¢þ
>WENV180019783
FTCO01000389
[FTCO] metagenome; soil
1873
1798
-
Phe
GAA
[ENA]
¢þ
>WENV180019811
FTCO01001586
[FTCO] metagenome; soil
1988
2073
+
Ser
GGA
[ENA]
¢þ
>WENV180019785
FTCO01000448
[FTCO] metagenome; soil
2041
1967
-
Gly
CCC
[ENA]
¢þ
>WENV180019805
FTCO01001211
[FTCO] metagenome; soil
2094
2188
+
SeC
TCA
[ENA]
¢þ
>WENV180019796
FTCO01000827
[FTCO] metagenome; soil
2354
2279
-
Pro
GGG
[ENA]
¢þ
>WENV180019800
FTCO01000942
[FTCO] metagenome; soil
2401
2325
-
fMet
CAT
[ENA]
¢þ
>WENV180019831
FTCO01001664
[FTCO] metagenome; soil
2554
2482
-
Gln
TTG
[ENA]
¢þ
>WENV180019806
FTCO01001227
[FTCO] metagenome; soil
3178
3252
+
Pro
CGG
[ENA]
¢þ
>WENV180019787
FTCO01000484
[FTCO] metagenome; soil
3244
3319
+
Gln
CTG
[ENA]
¢þ
>WENV180019788
FTCO01000484
[FTCO] metagenome; soil
3372
3445
+
Glu
CTC
[ENA]
¢þ
>WENV180019830
FTCO01001664
[FTCO] metagenome; soil
3720
3645
-
Leu
CAA
[ENA]
¢þ
>WENV180019829
FTCO01001664
[FTCO] metagenome; soil
3827
3739
-
Leu
GAG
[ENA]
¢þ
>WENV180019828
FTCO01001664
[FTCO] metagenome; soil
3911
3838
-
Val
GAC
[ENA]
¢þ
>WENV180019827
FTCO01001664
[FTCO] metagenome; soil
4178
4103
-
Leu
TAG
[ENA]
¢þ
>WENV180019826
FTCO01001664
[FTCO] metagenome; soil
4467
4392
-
Pro
CGG
[ENA]
¢þ
>WENV180019795
FTCO01000765
[FTCO] metagenome; soil
4623
4710
+
Ser
TGA
[ENA]
¢þ
>WENV180019794
FTCO01000705
[FTCO] metagenome; soil
4670
4595
-
Met
CAT
[ENA]
¢þ
>WENV180019779
FTCO01000231
[FTCO] metagenome; soil
4890
4964
+
Thr
CGT
[ENA]
¢þ
>WENV180019825
FTCO01001664
[FTCO] metagenome; soil
4964
4889
-
Glu
CTC
[ENA]
¢þ
>WENV180019824
FTCO01001664
[FTCO] metagenome; soil
5154
5082
-
Gly
GCC
[ENA]
¢þ
>WENV180019823
FTCO01001664
[FTCO] metagenome; soil
5238
5167
-
Gly
TCC
[ENA]
¢þ
>WENV180019822
FTCO01001664
[FTCO] metagenome; soil
5427
5355
-
Ala
TGC
[ENA]
¢þ
>WENV180019798
FTCO01000924
[FTCO] metagenome; soil
5686
5771
+
Leu
TAA
[ENA]
¢þ
>WENV180019821
FTCO01001664
[FTCO] metagenome; soil
5827
5754
-
Arg
CCT
[ENA]
¢þ
>WENV180019802
FTCO01001020
[FTCO] metagenome; soil
6618
6691
+
Val
CAC
[ENA]
¢þ
>WENV180019820
FTCO01001664
[FTCO] metagenome; soil
7716
7642
-
His
GTG
[ENA]
¢þ
>WENV180019819
FTCO01001664
[FTCO] metagenome; soil
7808
7735
-
Pro
TGG
[ENA]
¢þ
>WENV180019818
FTCO01001664
[FTCO] metagenome; soil
7882
7808
-
Phe
GAA
[ENA]
¢þ
>WENV180019817
FTCO01001664
[FTCO] metagenome; soil
8126
8053
-
Thr
CGT
[ENA]
¢þ
>WENV180019816
FTCO01001664
[FTCO] metagenome; soil
8205
8130
-
Asn
GTT
[ENA]
¢þ
>WENV180019815
FTCO01001664
[FTCO] metagenome; soil
8372
8298
-
Gln
CTG
[ENA]
¢þ
>WENV180019814
FTCO01001664
[FTCO] metagenome; soil
8458
8385
-
Lys
TTT
[ENA]
¢þ
>WENV180019813
FTCO01001664
[FTCO] metagenome; soil
8542
8470
-
Lys
CTT
[ENA]
¢þ
>WENV180019812
FTCO01001664
[FTCO] metagenome; soil
8629
8547
-
Tyr
GTA
[ENA]
¢þ
>WENV180019808
FTCO01001543
[FTCO] metagenome; soil
8893
8965
+
Cys
GCA
[ENA]
¢þ
>WENV180019807
FTCO01001515
[FTCO] metagenome; soil
8951
9033
+
Leu
TAG
[ENA]
¢þ
>WENV180019777
FTCO01000100
[FTCO] metagenome; soil
11224
11297
+
Gly
GCC
[ENA]
¢þ
>WENV180019799
FTCO01000942
[FTCO] metagenome; soil
11674
11763
+
Ser
GCT
[ENA]
¢þ
>WENV180019775
FTCO01000078
[FTCO] metagenome; soil
13282
13358
+
Arg
TCG
[ENA]
¢þ
>WENV180019776
FTCO01000078
[FTCO] metagenome; soil
13409
13483
+
Lys
CTT
[ENA]
¢þ
>WENV180019797
FTCO01000839
[FTCO] metagenome; soil
14338
14264
-
Arg
CCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK