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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FTCP] metagenome; soil
HIT:
16 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180019849
FTCP01000424
[FTCP] metagenome; soil
1
74
+
Lys
CTT
[ENA]
¢þ
>WENV180019847
FTCP01000390
[FTCP] metagenome; soil
11
96
+
Ser
GGA
[ENA]
¢þ
>WENV180019841
FTCP01000128
[FTCP] metagenome; soil
49
132
+
Leu
GAG
[ENA]
¢þ
>WENV180019840
FTCP01000125
[FTCP] metagenome; soil
90
164
+
Arg
TCT
[ENA]
¢þ
>WENV180019846
FTCP01000356
[FTCP] metagenome; soil
181
255
+
Ala
CGC
[ENA]
¢þ
>WENV180019843
FTCP01000239
[FTCP] metagenome; soil
351
435
+
Tyr
GTA
[ENA]
¢þ
>WENV180019836
FTCP01000025
[FTCP] metagenome; soil
390
314
-
Asp
GTC
[ENA]
¢þ
>WENV180019835
FTCP01000025
[FTCP] metagenome; soil
524
450
-
Glu
TTC
[ENA]
¢þ
>WENV180019845
FTCP01000348
[FTCP] metagenome; soil
647
729
+
Leu
TAG
[ENA]
¢þ
>WENV180019834
FTCP01000020
[FTCP] metagenome; soil
1293
1365
+
Gln
CTG
[ENA]
¢þ
>WENV180019844
FTCP01000290
[FTCP] metagenome; soil
1496
1413
-
Leu
CAG
[ENA]
¢þ
>WENV180019848
FTCP01000419
[FTCP] metagenome; soil
1697
1625
-
Gln
TTG
[ENA]
¢þ
>WENV180019839
FTCP01000098
[FTCP] metagenome; soil
2007
1934
-
Ala
TGC
[ENA]
¢þ
>WENV180019838
FTCP01000098
[FTCP] metagenome; soil
2180
2106
-
Ile
GAT
[ENA]
¢þ
>WENV180019837
FTCP01000093
[FTCP] metagenome; soil
2714
2640
-
Leu
TAA
[ENA]
¢þ
>WENV180019842
FTCP01000218
[FTCP] metagenome; soil
3460
3533
+
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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