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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FTCX] metagenome; soil
HIT:
31 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180020187
FTCX01000284
[FTCX] metagenome; soil
9
97
+
Ser
GCT
[ENA]
¢þ
>WENV180020202
FTCX01000615
[FTCX] metagenome; soil
20
92
+
Gly
GCC
[ENA]
¢þ
>WENV180020200
FTCX01000589
[FTCX] metagenome; soil
75
148
+
Ala
GGC
[ENA]
¢þ
>WENV180020206
FTCX01000728
[FTCX] metagenome; soil
77
6
-
Gln
CTG
[ENA]
¢þ
>WENV180020176
FTCX01000017
[FTCX] metagenome; soil
166
90
-
Met
CAT
[ENA]
¢þ
>WENV180020185
FTCX01000268
[FTCX] metagenome; soil
1379
1305
-
Ile2
CAT
[ENA]
¢þ
>WENV180020183
FTCX01000231
[FTCX] metagenome; soil
1544
1620
+
Asn
GTT
[ENA]
¢þ
>WENV180020203
FTCX01000648
[FTCX] metagenome; soil
1633
1709
+
Ala
CGC
[ENA]
¢þ
>WENV180020179
FTCX01000135
[FTCX] metagenome; soil
1800
1874
+
Gly
CCC
[ENA]
¢þ
>WENV180020197
FTCX01000460
[FTCX] metagenome; soil
1874
1801
-
Lys
TTT
[ENA]
¢þ
>WENV180020199
FTCX01000494
[FTCX] metagenome; soil
2019
1944
-
Arg
CCT
[ENA]
¢þ
>WENV180020196
FTCX01000456
[FTCX] metagenome; soil
2221
2293
+
Val
GAC
[ENA]
¢þ
>WENV180020192
FTCX01000310
[FTCX] metagenome; soil
2680
2606
-
Glu
CTC
[ENA]
¢þ
>WENV180020198
FTCX01000485
[FTCX] metagenome; soil
2779
2708
-
Gln
TTG
[ENA]
¢þ
>WENV180020191
FTCX01000310
[FTCX] metagenome; soil
2795
2724
-
Gln
CTG
[ENA]
¢þ
>WENV180020189
FTCX01000292
[FTCX] metagenome; soil
3310
3398
+
Ser
TGA
[ENA]
¢þ
>WENV180020177
FTCX01000089
[FTCX] metagenome; soil
5620
5546
-
Pro
CGG
[ENA]
¢þ
>WENV180020182
FTCX01000200
[FTCX] metagenome; soil
5861
5934
+
Lys
CTT
[ENA]
¢þ
>WENV180020195
FTCX01000387
[FTCX] metagenome; soil
6199
6112
-
Ser
CGA
[ENA]
¢þ
>WENV180020205
FTCX01000661
[FTCX] metagenome; soil
6871
6799
-
Val
TAC
[ENA]
¢þ
>WENV180020188
FTCX01000285
[FTCX] metagenome; soil
7151
7077
-
Thr
CGT
[ENA]
¢þ
>WENV180020181
FTCX01000161
[FTCX] metagenome; soil
8045
7971
-
Arg
ACG
[ENA]
¢þ
>WENV180020184
FTCX01000235
[FTCX] metagenome; soil
9045
9118
+
Cys
GCA
[ENA]
¢þ
>WENV180020186
FTCX01000276
[FTCX] metagenome; soil
9463
9550
+
Ser
CGA
[ENA]
¢þ
>WENV180020180
FTCX01000149
[FTCX] metagenome; soil
9644
9571
-
His
GTG
[ENA]
¢þ
>WENV180020194
FTCX01000336
[FTCX] metagenome; soil
10350
10423
+
Val
CAC
[ENA]
¢þ
>WENV180020190
FTCX01000296
[FTCX] metagenome; soil
11107
11023
-
Leu
CAG
[ENA]
¢þ
>WENV180020201
FTCX01000591
[FTCX] metagenome; soil
11433
11349
-
Leu
GAG
[ENA]
¢þ
>WENV180020204
FTCX01000661
[FTCX] metagenome; soil
12377
12303
-
Asp
GTC
[ENA]
¢þ
>WENV180020193
FTCX01000323
[FTCX] metagenome; soil
18081
17995
-
Leu
CAA
[ENA]
¢þ
>WENV180020178
FTCX01000113
[FTCX] metagenome; soil
21352
21277
-
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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