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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTDA] metagenome; soil
HIT:
31 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180020696
FTDA01001452
[FTDA] metagenome; soil
1
87
+
Leu
CAA
[ENA]
¢þ
>WENV180020702
FTDA01001900
[FTDA] metagenome; soil
8
84
+
Met
CAT
[ENA]
¢þ
>WENV180020703
FTDA01001944
[FTDA] metagenome; soil
76
2
-
Asp
GTC
[ENA]
¢þ
>WENV180020693
FTDA01001358
[FTDA] metagenome; soil
77
6
-
Gln
CTG
[ENA]
¢þ
>WENV180020679
FTDA01000106
[FTDA] metagenome; soil
84
-1
-
Leu
CAA
[ENA]
¢þ
>WENV180020707
FTDA01001990
[FTDA] metagenome; soil
90
4
-
Leu
TAA
[ENA]
¢þ
>WENV180020685
FTDA01000688
[FTDA] metagenome; soil
263
188
-
Glu
TTC
[ENA]
¢þ
>WENV180020692
FTDA01001335
[FTDA] metagenome; soil
504
575
+
Gln
TTG
[ENA]
¢þ
>WENV180020691
FTDA01001204
[FTDA] metagenome; soil
829
754
-
Arg
TCT
[ENA]
¢þ
>WENV180020708
FTDA01002056
[FTDA] metagenome; soil
914
840
-
Asp
GTC
[ENA]
¢þ
>WENV180020688
FTDA01000978
[FTDA] metagenome; soil
1135
1062
-
Asn
GTT
[ENA]
¢þ
>WENV180020686
FTDA01000717
[FTDA] metagenome; soil
1324
1397
+
His
GTG
[ENA]
¢þ
>WENV180020700
FTDA01001781
[FTDA] metagenome; soil
1632
1708
+
Arg
TCG
[ENA]
¢þ
>WENV180020709
FTDA01002070
[FTDA] metagenome; soil
1767
1679
-
Ser
CGA
[ENA]
¢þ
>WENV180020680
FTDA01000167
[FTDA] metagenome; soil
1973
1899
-
Thr
CGT
[ENA]
¢þ
>WENV180020683
FTDA01000584
[FTDA] metagenome; soil
2427
2500
+
Val
CAC
[ENA]
¢þ
>WENV180020699
FTDA01001607
[FTDA] metagenome; soil
2693
2618
-
Met
CAT
[ENA]
¢þ
>WENV180020695
FTDA01001415
[FTDA] metagenome; soil
2716
2643
-
Ala
GGC
[ENA]
¢þ
>WENV180020697
FTDA01001458
[FTDA] metagenome; soil
2760
2835
+
Arg
TCT
[ENA]
¢þ
>WENV180020684
FTDA01000647
[FTDA] metagenome; soil
3254
3327
+
Ile2
CAT
[ENA]
¢þ
>WENV180020701
FTDA01001899
[FTDA] metagenome; soil
3645
3573
-
Val
TAC
[ENA]
¢þ
>WENV180020704
FTDA01001953
[FTDA] metagenome; soil
3863
3937
+
Arg
ACG
[ENA]
¢þ
>WENV180020687
FTDA01000945
[FTDA] metagenome; soil
4692
4768
+
fMet
CAT
[ENA]
¢þ
>WENV180020690
FTDA01001168
[FTDA] metagenome; soil
4811
4736
-
Ala
AGC
[ENA]
¢þ
>WENV180020682
FTDA01000430
[FTDA] metagenome; soil
5305
5379
+
Arg
CCG
[ENA]
¢þ
>WENV180020705
FTDA01001956
[FTDA] metagenome; soil
5962
6035
+
Lys
CTT
[ENA]
¢þ
>WENV180020706
FTDA01001971
[FTDA] metagenome; soil
6075
6159
+
Leu
GAG
[ENA]
¢þ
>WENV180020681
FTDA01000353
[FTDA] metagenome; soil
6084
6008
-
Ala
CGC
[ENA]
¢þ
>WENV180020698
FTDA01001473
[FTDA] metagenome; soil
7055
7143
+
Ser
GCT
[ENA]
¢þ
>WENV180020694
FTDA01001394
[FTDA] metagenome; soil
12537
12613
+
Pro
GGG
[ENA]
¢þ
>WENV180020689
FTDA01001147
[FTDA] metagenome; soil
13472
13546
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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